Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CHRM3-AS2 (CHRM3 antisense RNA 2)

Identity

Alias_namesCHRM3 antisense RNA 2 (non-protein coding)
Other alias-
HGNC (Hugo) CHRM3-AS2
LocusID (NCBI) 100506915
Atlas_Id 61811
Location 1q43  [Link to chromosome band 1q43]
Location_base_pair Starts at 239707126 and ends at 239719119 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHRM3-AS2   43725
Cards
Entrez_Gene (NCBI)CHRM3-AS2  100506915  CHRM3 antisense RNA 2
Aliases
GeneCards (Weizmann)CHRM3-AS2
Ensembl hg19 (Hinxton)ENSG00000233355 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233355 [Gene_View]  chr1:239707126-239719119 [Contig_View]  CHRM3-AS2 [Vega]
ICGC DataPortalENSG00000233355
TCGA cBioPortalCHRM3-AS2
AceView (NCBI)CHRM3-AS2
Genatlas (Paris)CHRM3-AS2
WikiGenes100506915
SOURCE (Princeton)CHRM3-AS2
Genetics Home Reference (NIH)CHRM3-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)CHRM3-AS2  -     chr1:239707126-239719119 -  1q43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHRM3-AS2  -     1q43   [Description]    (hg19-Feb_2009)
EnsemblCHRM3-AS2 - 1q43 [CytoView hg19]  CHRM3-AS2 - 1q43 [CytoView hg38]
Mapping of homologs : NCBICHRM3-AS2 [Mapview hg19]  CHRM3-AS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL832284 CT002712
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHRM3-AS2
Cluster EST : UnigeneHs.667175 [ NCBI ]
CGAP (NCI)Hs.667175
Alternative Splicing GalleryENSG00000233355
Gene ExpressionCHRM3-AS2 [ NCBI-GEO ]   CHRM3-AS2 [ EBI - ARRAY_EXPRESS ]   CHRM3-AS2 [ SEEK ]   CHRM3-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)CHRM3-AS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506915
GTEX Portal (Tissue expression)CHRM3-AS2
Human Protein AtlasENSG00000233355-CHRM3-AS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CHRM3-AS2
DMDM Disease mutations100506915
Blocks (Seattle)CHRM3-AS2
Human Protein Atlas [tissue]ENSG00000233355-CHRM3-AS2 [tissue]
Protein Interaction databases
FunCoupENSG00000233355
BioGRIDCHRM3-AS2
STRING (EMBL)CHRM3-AS2
ZODIACCHRM3-AS2
Ontologies - Pathways
Huge Navigator CHRM3-AS2 [HugePedia]
snp3D : Map Gene to Disease100506915
BioCentury BCIQCHRM3-AS2
ClinGenCHRM3-AS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506915
Clinical trialCHRM3-AS2
Miscellaneous
canSAR (ICR)CHRM3-AS2 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHRM3-AS2
EVEXCHRM3-AS2
GoPubMedCHRM3-AS2
iHOPCHRM3-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 12:59:43 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.