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CHRNA9 (cholinergic receptor, nicotinic, alpha 9 (neuronal))

Identity

Other namesHSA243342
NACHRA9
HGNC (Hugo) CHRNA9
LocusID (NCBI) 55584
Location 4p14
Location_base_pair Starts at 40337346 and ends at 40357234 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)CHRNA9   14079
Entrez_Gene (NCBI)CHRNA9  55584  cholinergic receptor, nicotinic, alpha 9 (neuronal)
Cards
GeneCards (Weizmann)CHRNA9
Ensembl (Hinxton)ENSG00000174343 [Gene_View]  chr4:40337346-40357234 [Contig_View]  CHRNA9 [Vega]
AceView (NCBI)CHRNA9
Genatlas (Paris)CHRNA9
SOURCE (Stanford)NM_017581
Genomic and cartography
GoldenPath (UCSC)CHRNA9  -  4p14   chr4:40337346-40357234 +  4p14   [Description]    (hg19-Feb_2009)
EnsemblCHRNA9 - 4p14 [CytoView]
Mapping of homologs : NCBICHRNA9 [Mapview]
OMIM605116   
Gene and transcription
Genbank (Entrez)AF227732 AJ243342 BC111595 BC113549 BC113575
RefSeq transcript (SRS)NM_017581
RefSeq transcript (Entrez)NM_017581
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_006238 NW_001838903 NW_004078018
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_006238 NW_001838903 NW_004078018
Consensus coding sequences : CCDS (NCBI)CHRNA9
Cluster EST : UnigeneHs.272278 [ SRS ] Hs.272278 [ NCBI ]
CGAP (NCI)Hs.272278
Alternative Splicing : Fast-db (Paris)GSHG0022552
Alternative Splicing GalleryENSG00000174343
Gene ExpressionCHRNA9 [ NCBI-GEO ]   CHRNA9 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGM1 (SRS) Q9UGM1 (Uniprot)
NextProtQ9UGM1
With graphics : InterProQ9UGM1
Splice isoforms : SwissVarQ9UGM1(Swissvar)
Domaine pattern : Prosite (SRS)NEUROTR_ION_CHANNEL (PS00236)   
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (SRS)Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS    Nicotinic_acetylcholine_rcpt   
Domains : Interpro (EBI)Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS    Nicotinic_acetylcholine_rcpt   
Related proteins : CluSTrQ9UGM1
Domain families : Pfam (SRS)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
DMDM55584
Blocks (Seattle)Q9UGM1
Human Protein AtlasENSG00000174343
HPRD16092
IPIIPI00005432   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGM1
IntAct (EBI)Q9UGM1
FunCoupENSG00000174343
REACTOMECHRNA9
Protein Interaction Database55584
BioGRIDCHRNA9
InParanoidQ9UGM1
Interologous Interaction database Q9UGM1
IntegromeDBCHRNA9
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CHRNA9
SNP (GeneSNP Utah)CHRNA9
SNP : HGBaseCHRNA9
Genetic variants : HAPMAPCHRNA9
Somatic Mutations in Cancer : COSMICCHRNA9 
CONAN: Copy Number AnalysisCHRNA9 
Mutations and Diseases : HGMDCHRNA9
OMIM605116   
GENETests605116   
Disease Genetic AssociationCHRNA9
Huge Navigator CHRNA9 [HugePedia]  CHRNA9 [HugeCancerGEM]
Genomic VariantsCHRNA9  CHRNA9 [DGVbeta]
snp3D : Map Gene to Disease55584
General knowledge
Homologs : HomoloGeneCHRNA9
Homology/Alignments : Family Browser (UCSC)CHRNA9
Phylogenetic Trees/Animal Genes : TreeFamCHRNA9
Chemical/Protein Interactions : CTD55584
Chemical/Pharm GKB GenePA26493
Clinical trialCHRNA9
Cancer Resource (Charite)ENSG00000174343
Ontology : AmiGOacetylcholine-activated cation-selective channel activity  calcium channel activity  plasma membrane  acetylcholine-gated channel complex  elevation of cytosolic calcium ion concentration  synaptic transmission  cell junction  inner ear morphogenesis  postsynaptic membrane  detection of mechanical stimulus involved in sensory perception of sound  
Ontology : EGO-EBIacetylcholine-activated cation-selective channel activity  calcium channel activity  plasma membrane  acetylcholine-gated channel complex  elevation of cytosolic calcium ion concentration  synaptic transmission  cell junction  inner ear morphogenesis  postsynaptic membrane  detection of mechanical stimulus involved in sensory perception of sound  
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
PubGeneCHRNA9
iHOPCHRNA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:20:19 CEST 2013
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