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CHRNG (cholinergic receptor nicotinic gamma subunit)

Identity

Other namesACHRG
HGNC (Hugo) CHRNG
LocusID (NCBI) 1146
Atlas_Id 50850
Location 2q37.1
Location_base_pair Starts at 233404437 and ends at 233411038 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHRNG   1967
Cards
Entrez_Gene (NCBI)CHRNG  1146  cholinergic receptor nicotinic gamma subunit
GeneCards (Weizmann)CHRNG
Ensembl hg19 (Hinxton)ENSG00000196811 [Gene_View]  chr2:233404437-233411038 [Contig_View]  CHRNG [Vega]
Ensembl hg38 (Hinxton)ENSG00000196811 [Gene_View]  chr2:233404437-233411038 [Contig_View]  CHRNG [Vega]
ICGC DataPortalENSG00000196811
TCGA cBioPortalCHRNG
AceView (NCBI)CHRNG
Genatlas (Paris)CHRNG
WikiGenes1146
SOURCE (Princeton)CHRNG
Genomic and cartography
GoldenPath hg19 (UCSC)CHRNG  -     chr2:233404437-233411038 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHRNG  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblCHRNG - 2q37.1 [CytoView hg19]  CHRNG - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBICHRNG [Mapview hg19]  CHRNG [Mapview hg38]
OMIM100730   253290   265000   
Gene and transcription
Genbank (Entrez)AK125362 AK309340 BC111802
RefSeq transcript (Entrez)NM_005199
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_012954 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)CHRNG
Cluster EST : UnigeneHs.248101 [ NCBI ]
CGAP (NCI)Hs.248101
Alternative Splicing : Fast-db (Paris)GSHG0017280
Alternative Splicing GalleryENSG00000196811
Gene ExpressionCHRNG [ NCBI-GEO ]   CHRNG [ EBI - ARRAY_EXPRESS ]   CHRNG [ SEEK ]   CHRNG [ MEM ]
Gene Expression Viewer (FireBrowse)CHRNG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)1146
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07510 (Uniprot)
NextProtP07510  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07510
Splice isoforms : SwissVarP07510 (Swissvar)
PhosPhoSitePlusP07510
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (EBI)Acetylcholine_rcpt_TM    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS    Nicotinic_acetylcholine_rcpt   
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
DMDM Disease mutations1146
Blocks (Seattle)CHRNG
SuperfamilyP07510
Human Protein AtlasENSG00000196811
Peptide AtlasP07510
HPRD00009
IPIIPI00746413   IPI00782932   
Protein Interaction databases
DIP (DOE-UCLA)P07510
IntAct (EBI)P07510
FunCoupENSG00000196811
BioGRIDCHRNG
STRING (EMBL)CHRNG
ZODIACCHRNG
Ontologies - Pathways
QuickGOP07510
Ontology : AmiGOacetylcholine-activated cation-selective channel activity  protein binding  plasma membrane  integral component of plasma membrane  acetylcholine-gated channel complex  transport  muscle contraction  signal transduction  synaptic transmission, cholinergic  neuromuscular synaptic transmission  channel activity  ligand-gated ion channel activity  acetylcholine receptor activity  cell junction  response to nicotine  acetylcholine binding  postsynaptic membrane  cation transmembrane transport  chemical synaptic transmission, postsynaptic  
Ontology : EGO-EBIacetylcholine-activated cation-selective channel activity  protein binding  plasma membrane  integral component of plasma membrane  acetylcholine-gated channel complex  transport  muscle contraction  signal transduction  synaptic transmission, cholinergic  neuromuscular synaptic transmission  channel activity  ligand-gated ion channel activity  acetylcholine receptor activity  cell junction  response to nicotine  acetylcholine binding  postsynaptic membrane  cation transmembrane transport  chemical synaptic transmission, postsynaptic  
Pathways : BIOCARTARole of nicotinic acetylcholine receptors in the regulation of apoptosis [Genes]   
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx Network
Atlas of Cancer Signalling NetworkCHRNG
Wikipedia pathwaysCHRNG
Orthology - Evolution
OrthoDB1146
GeneTree (enSembl)ENSG00000196811
Phylogenetic Trees/Animal Genes : TreeFamCHRNG
Homologs : HomoloGeneCHRNG
Homology/Alignments : Family Browser (UCSC)CHRNG
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCHRNG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHRNG
dbVarCHRNG
ClinVarCHRNG
1000_GenomesCHRNG 
Exome Variant ServerCHRNG
ExAC (Exome Aggregation Consortium)CHRNG (select the gene name)
SNP (GeneSNP Utah)CHRNG
SNP : HGBaseCHRNG
Genetic variants : HAPMAPCHRNG
Genomic Variants (DGV)CHRNG [DGVbeta]
Mutations
ICGC Data PortalCHRNG 
TCGA Data PortalCHRNG 
Broad Tumor PortalCHRNG
OASIS PortalCHRNG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHRNG 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHRNG
DgiDB (Drug Gene Interaction Database)CHRNG
DoCM (Curated mutations)CHRNG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHRNG (select a term)
intoGenCHRNG
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:233404437-233411038
CONAN: Copy Number AnalysisCHRNG 
Mutations and Diseases : HGMDCHRNG
OMIM100730    253290    265000   
MedgenCHRNG
Genetic Testing Registry CHRNG
NextProtP07510 [Medical]
TSGene1146
GENETestsCHRNG
Huge Navigator CHRNG [HugePedia]  CHRNG [HugeCancerGEM]
snp3D : Map Gene to Disease1146
BioCentury BCIQCHRNG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1146
Chemical/Pharm GKB GenePA26499
Clinical trialCHRNG
Miscellaneous
canSAR (ICR)CHRNG (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHRNG
GoPubMedCHRNG
iHOPCHRNG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Apr 16 17:40:10 CEST 2016

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