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CHRNG (cholinergic receptor, nicotinic, gamma (muscle))

Identity

Other namesACHRG
HGNC (Hugo) CHRNG
LocusID (NCBI) 1146
Location 2q37.1
Location_base_pair Starts at 233404437 and ends at 233411038 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHRNG   1967
Cards
Entrez_Gene (NCBI)CHRNG  1146  cholinergic receptor, nicotinic, gamma (muscle)
GeneCards (Weizmann)CHRNG
Ensembl (Hinxton)ENSG00000196811 [Gene_View]  chr2:233404437-233411038 [Contig_View]  CHRNG [Vega]
ICGC DataPortalENSG00000196811
AceView (NCBI)CHRNG
Genatlas (Paris)CHRNG
WikiGenes1146
SOURCE (Princeton)NM_005199
Genomic and cartography
GoldenPath (UCSC)CHRNG  -  2q37.1   chr2:233404437-233411038 +  2q37.1   [Description]    (hg19-Feb_2009)
EnsemblCHRNG - 2q37.1 [CytoView]
Mapping of homologs : NCBICHRNG [Mapview]
OMIM100730   253290   265000   
Gene and transcription
Genbank (Entrez)AK125362 AK309340 BC111802
RefSeq transcript (Entrez)NM_005199
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_012954 NT_005403 NW_001838867 NW_004929305
Consensus coding sequences : CCDS (NCBI)CHRNG
Cluster EST : UnigeneHs.248101 [ NCBI ]
CGAP (NCI)Hs.248101
Alternative Splicing : Fast-db (Paris)GSHG0017280
Alternative Splicing GalleryENSG00000196811
Gene ExpressionCHRNG [ NCBI-GEO ]     CHRNG [ SEEK ]   CHRNG [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07510 (Uniprot)
NextProtP07510  [Medical]
With graphics : InterProP07510
Splice isoforms : SwissVarP07510 (Swissvar)
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (EBI)Acetylcholine_rcpt_TM    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS    Nicotinic_acetylcholine_rcpt   
Related proteins : CluSTrP07510
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
DMDM Disease mutations1146
Blocks (Seattle)P07510
Human Protein AtlasENSG00000196811
Peptide AtlasP07510
HPRD00009
IPIIPI00746413   IPI00782932   
Protein Interaction databases
DIP (DOE-UCLA)P07510
IntAct (EBI)P07510
FunCoupENSG00000196811
BioGRIDCHRNG
InParanoidP07510
Interologous Interaction database P07510
IntegromeDBCHRNG
STRING (EMBL)CHRNG
Ontologies - Pathways
Ontology : AmiGOacetylcholine-activated cation-selective channel activity  plasma membrane  integral component of plasma membrane  acetylcholine-gated channel complex  transport  cation transport  muscle contraction  signal transduction  synaptic transmission  channel activity  acetylcholine receptor activity  cell junction  ion transmembrane transport  regulation of membrane potential  postsynaptic membrane  transmembrane transport  
Ontology : EGO-EBIacetylcholine-activated cation-selective channel activity  plasma membrane  integral component of plasma membrane  acetylcholine-gated channel complex  transport  cation transport  muscle contraction  signal transduction  synaptic transmission  channel activity  acetylcholine receptor activity  cell junction  ion transmembrane transport  regulation of membrane potential  postsynaptic membrane  transmembrane transport  
Pathways : BIOCARTARole of nicotinic acetylcholine receptors in the regulation of apoptosis [Genes]   
Pathways : KEGGNeuroactive ligand-receptor interaction   
Protein Interaction DatabaseCHRNG
Wikipedia pathwaysCHRNG
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CHRNG
SNP (GeneSNP Utah)CHRNG
SNP : HGBaseCHRNG
Genetic variants : HAPMAPCHRNG
1000_GenomesCHRNG 
ICGC programENSG00000196811 
CONAN: Copy Number AnalysisCHRNG 
Somatic Mutations in Cancer : COSMICCHRNG 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
Mutations and Diseases : HGMDCHRNG
OMIM100730    253290    265000   
MedgenCHRNG
GENETestsCHRNG
Disease Genetic AssociationCHRNG
Huge Navigator CHRNG [HugePedia]  CHRNG [HugeCancerGEM]
Genomic VariantsCHRNG  CHRNG [DGVbeta]
Exome VariantCHRNG
dbVarCHRNG
ClinVarCHRNG
snp3D : Map Gene to Disease1146
General knowledge
Homologs : HomoloGeneCHRNG
Homology/Alignments : Family Browser (UCSC)CHRNG
Phylogenetic Trees/Animal Genes : TreeFamCHRNG
Chemical/Protein Interactions : CTD1146
Chemical/Pharm GKB GenePA26499
Clinical trialCHRNG
Cancer Resource (Charite)ENSG00000196811
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
CoreMineCHRNG
iHOPCHRNG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:38:52 CEST 2014

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