Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHRNG (cholinergic receptor, nicotinic, gamma (muscle))

Identity

Other namesACHRG
HGNC (Hugo) CHRNG
LocusID (NCBI) 1146
Location 2q37.1
Location_base_pair Starts at 233404437 and ends at 233411038 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHRNG   1967
Cards
Entrez_Gene (NCBI)CHRNG  1146  cholinergic receptor, nicotinic, gamma (muscle)
GeneCards (Weizmann)CHRNG
Ensembl hg19 (Hinxton)ENSG00000196811 [Gene_View]  chr2:233404437-233411038 [Contig_View]  CHRNG [Vega]
Ensembl hg38 (Hinxton)ENSG00000196811 [Gene_View]  chr2:233404437-233411038 [Contig_View]  CHRNG [Vega]
ICGC DataPortalENSG00000196811
cBioPortalCHRNG
AceView (NCBI)CHRNG
Genatlas (Paris)CHRNG
WikiGenes1146
SOURCE (Princeton)CHRNG
Genomic and cartography
GoldenPath hg19 (UCSC)CHRNG  -     chr2:233404437-233411038 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHRNG  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblCHRNG - 2q37.1 [CytoView hg19]  CHRNG - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBICHRNG [Mapview hg19]  CHRNG [Mapview hg38]
OMIM100730   253290   265000   
Gene and transcription
Genbank (Entrez)AK125362 AK309340 BC111802
RefSeq transcript (Entrez)NM_005199
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_012954 NT_005403 NW_001838867 NW_004929305
Consensus coding sequences : CCDS (NCBI)CHRNG
Cluster EST : UnigeneHs.248101 [ NCBI ]
CGAP (NCI)Hs.248101
Alternative Splicing : Fast-db (Paris)GSHG0017280
Alternative Splicing GalleryENSG00000196811
Gene ExpressionCHRNG [ NCBI-GEO ]     CHRNG [ SEEK ]   CHRNG [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07510 (Uniprot)
NextProtP07510  [Medical]
With graphics : InterProP07510
Splice isoforms : SwissVarP07510 (Swissvar)
Domaine pattern : Prosite (Expaxy)NEUROTR_ION_CHANNEL (PS00236)   
Domains : Interpro (EBI)Acetylcholine_rcpt_TM    Neur_chan_lig-bd    Neur_channel    Neurotrans-gated_channel_TM    Neurotransmitter_ion_chnl_CS    Nicotinic_acetylcholine_rcpt   
Related proteins : CluSTrP07510
Domain families : Pfam (Sanger)Neur_chan_LBD (PF02931)    Neur_chan_memb (PF02932)   
Domain families : Pfam (NCBI)pfam02931    pfam02932   
DMDM Disease mutations1146
Blocks (Seattle)P07510
Human Protein AtlasENSG00000196811
Peptide AtlasP07510
HPRD00009
IPIIPI00746413   IPI00782932   
Protein Interaction databases
DIP (DOE-UCLA)P07510
IntAct (EBI)P07510
FunCoupENSG00000196811
BioGRIDCHRNG
IntegromeDBCHRNG
STRING (EMBL)CHRNG
Ontologies - Pathways
QuickGOP07510
Ontology : AmiGOacetylcholine-activated cation-selective channel activity  plasma membrane  integral component of plasma membrane  acetylcholine-gated channel complex  transport  cation transport  muscle contraction  signal transduction  synaptic transmission  channel activity  acetylcholine receptor activity  cell junction  ion transmembrane transport  regulation of membrane potential  postsynaptic membrane  transmembrane transport  
Ontology : EGO-EBIacetylcholine-activated cation-selective channel activity  plasma membrane  integral component of plasma membrane  acetylcholine-gated channel complex  transport  cation transport  muscle contraction  signal transduction  synaptic transmission  channel activity  acetylcholine receptor activity  cell junction  ion transmembrane transport  regulation of membrane potential  postsynaptic membrane  transmembrane transport  
Pathways : BIOCARTARole of nicotinic acetylcholine receptors in the regulation of apoptosis [Genes]   
Pathways : KEGGNeuroactive ligand-receptor interaction   
Protein Interaction DatabaseCHRNG
DoCM (Curated mutations)CHRNG
Wikipedia pathwaysCHRNG
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCHRNG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHRNG
dbVarCHRNG
ClinVarCHRNG
1000_GenomesCHRNG 
Exome Variant ServerCHRNG
SNP (GeneSNP Utah)CHRNG
SNP : HGBaseCHRNG
Genetic variants : HAPMAPCHRNG
Genomic VariantsCHRNG  CHRNG [DGVbeta]
Mutations
ICGC Data PortalENSG00000196811 
Somatic Mutations in Cancer : COSMICCHRNG 
CONAN: Copy Number AnalysisCHRNG 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:233404437-233411038
Mutations and Diseases : HGMDCHRNG
OMIM100730    253290    265000   
MedgenCHRNG
NextProtP07510 [Medical]
GENETestsCHRNG
Disease Genetic AssociationCHRNG
Huge Navigator CHRNG [HugePedia]  CHRNG [HugeCancerGEM]
snp3D : Map Gene to Disease1146
DGIdb (Drug Gene Interaction db)CHRNG
General knowledge
Homologs : HomoloGeneCHRNG
Homology/Alignments : Family Browser (UCSC)CHRNG
Phylogenetic Trees/Animal Genes : TreeFamCHRNG
Chemical/Protein Interactions : CTD1146
Chemical/Pharm GKB GenePA26499
Clinical trialCHRNG
Cancer Resource (Charite)ENSG00000196811
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
CoreMineCHRNG
GoPubMedCHRNG
iHOPCHRNG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:50:49 CET 2014

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