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CHST10 (carbohydrate sulfotransferase 10)

Identity

Alias_symbol (synonym)HNK-1ST
Other aliasHNK1ST
HGNC (Hugo) CHST10
LocusID (NCBI) 9486
Atlas_Id 51024
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 100391860 and ends at 100417668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACKR2 (3p22.1) / CHST10 (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST10   19650
Cards
Entrez_Gene (NCBI)CHST10  9486  carbohydrate sulfotransferase 10
AliasesHNK-1ST; HNK1ST
GeneCards (Weizmann)CHST10
Ensembl hg19 (Hinxton)ENSG00000115526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115526 [Gene_View]  chr2:100391860-100417668 [Contig_View]  CHST10 [Vega]
ICGC DataPortalENSG00000115526
TCGA cBioPortalCHST10
AceView (NCBI)CHST10
Genatlas (Paris)CHST10
WikiGenes9486
SOURCE (Princeton)CHST10
Genetics Home Reference (NIH)CHST10
Genomic and cartography
GoldenPath hg38 (UCSC)CHST10  -     chr2:100391860-100417668 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST10  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblCHST10 - 2q11.2 [CytoView hg19]  CHST10 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBICHST10 [Mapview hg19]  CHST10 [Mapview hg38]
OMIM606376   
Gene and transcription
Genbank (Entrez)AF003827 AF033827 AF070594 AK297267 AK313241
RefSeq transcript (Entrez)NM_004854
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHST10
Cluster EST : UnigeneHs.731724 [ NCBI ]
CGAP (NCI)Hs.731724
Alternative Splicing GalleryENSG00000115526
Gene ExpressionCHST10 [ NCBI-GEO ]   CHST10 [ EBI - ARRAY_EXPRESS ]   CHST10 [ SEEK ]   CHST10 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9486
GTEX Portal (Tissue expression)CHST10
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43529   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43529  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43529
Splice isoforms : SwissVarO43529
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusO43529
Domains : Interpro (EBI)Carb_sulfotrans_8-10    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)CHST10
DMDM Disease mutations9486
Blocks (Seattle)CHST10
SuperfamilyO43529
Human Protein AtlasENSG00000115526
Peptide AtlasO43529
HPRD07332
IPIIPI01014699   IPI00006803   IPI00917886   IPI00917994   IPI00916992   IPI00915984   IPI00916136   
Protein Interaction databases
DIP (DOE-UCLA)O43529
IntAct (EBI)O43529
FunCoupENSG00000115526
BioGRIDCHST10
STRING (EMBL)CHST10
ZODIACCHST10
Ontologies - Pathways
QuickGOO43529
Ontology : AmiGOGolgi membrane  Golgi apparatus  cell adhesion  sulfotransferase activity  membrane  integral component of membrane  carbohydrate biosynthetic process  HNK-1 sulfotransferase activity  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  cell adhesion  sulfotransferase activity  membrane  integral component of membrane  carbohydrate biosynthetic process  HNK-1 sulfotransferase activity  
Pathways : KEGGOther types of O-glycan biosynthesis   
NDEx NetworkCHST10
Atlas of Cancer Signalling NetworkCHST10
Wikipedia pathwaysCHST10
Orthology - Evolution
OrthoDB9486
GeneTree (enSembl)ENSG00000115526
Phylogenetic Trees/Animal Genes : TreeFamCHST10
HOVERGENO43529
HOGENOMO43529
Homologs : HomoloGeneCHST10
Homology/Alignments : Family Browser (UCSC)CHST10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST10
dbVarCHST10
ClinVarCHST10
1000_GenomesCHST10 
Exome Variant ServerCHST10
ExAC (Exome Aggregation Consortium)CHST10 (select the gene name)
Genetic variants : HAPMAP9486
Genomic Variants (DGV)CHST10 [DGVbeta]
DECIPHERCHST10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST10 
Mutations
ICGC Data PortalCHST10 
TCGA Data PortalCHST10 
Broad Tumor PortalCHST10
OASIS PortalCHST10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST10
DgiDB (Drug Gene Interaction Database)CHST10
DoCM (Curated mutations)CHST10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST10 (select a term)
intoGenCHST10
Cancer3DCHST10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606376   
Orphanet
MedgenCHST10
Genetic Testing Registry CHST10
NextProtO43529 [Medical]
TSGene9486
GENETestsCHST10
Target ValidationCHST10
Huge Navigator CHST10 [HugePedia]
snp3D : Map Gene to Disease9486
BioCentury BCIQCHST10
ClinGenCHST10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9486
Chemical/Pharm GKB GenePA134920179
Clinical trialCHST10
Miscellaneous
canSAR (ICR)CHST10 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST10
EVEXCHST10
GoPubMedCHST10
iHOPCHST10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:02:27 CEST 2017

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