CHST12 (carbohydrate (chondroitin 4) sulfotransferase 12)

Identity

Other names	C4S-2
	C4ST-2
	C4ST2
HGNC	CHST12
Location	7p22
Location_base_pair	Starts at 2409785 and ends at 2440742 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CHST12   17423
Entrez_Gene	CHST12  55501  carbohydrate (chondroitin 4) sulfotransferase 12
	Cards
GeneCards	CHST12
Ensembl	CHST12 [Search_View]   ENSG00000136213 [Gene_View]
Genatlas	CHST12
GeneLynx	CHST12
eGenome	CHST12
euGene	55501
	Genomic and cartography
GoldenPath	CHST12  -  7p22   chr7:2409785-2440742 +  7p22.2   [Description]    (hg18-March_2006)
Ensembl	CHST12 - 7p22.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CHST12
	Gene and transcription
Genbank	AF239822 [ ENTREZ ]
Genbank	AJ289131 [ ENTREZ ]
Genbank	AK223191 [ ENTREZ ]
Genbank	AK223211 [ ENTREZ ]
Genbank	AK313484 [ ENTREZ ]
RefSeq	NM_018641 [ SRS ]    NM_018641 [ ENTREZ ]
RefSeq	AC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeq	AC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeq	AC_000139 [ SRS ]    AC_000139 [ ENTREZ ]
RefSeq	NC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeq	NT_007819 [ SRS ]    NT_007819 [ ENTREZ ]
RefSeq	NT_079592 [ SRS ]    NT_079592 [ ENTREZ ]
RefSeq	NW_001838998 [ SRS ]    NW_001838998 [ ENTREZ ]
RefSeq	NW_923206 [ SRS ]    NW_923206 [ ENTREZ ]
AceView	CHST12 AceView - NCBI
Unigene	Hs.213088 [ SRS ]    Hs.213088 [ NCBI ]     HS213088 [ spliceNest ]
Fast-db	1026 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q53FS1 [ SRS]    Q53FS1 [ EXPASY ]     Q53FS1 [ INTERPRO ]     Q53FS1 [ UNIPROT ]
Interpro	IPR005331 Carb_sulphotransferase_8-13 [ SRS ]    IPR005331 Carb_sulphotransferase_8-13 [ EBI ]
CluSTr	Q53FS1
Pfam	PF03567 Sulfotransfer_2 [ SRS ]    PF03567 Sulfotransfer_2 [ Sanger ]    pfam03567 [ NCBI-CDD ]
Blocks	Q53FS1
HPRD	13056
	Protein Interaction databases
DIP	Q53FS1
IntAct	Q53FS1
	Polymorphism : SNP, mutations, diseases
OMIM	610129    [ map ]
GENECLINICS	610129
SNP	CHST12 [dbSNP-NCBI]
SNP	NM_018641 [SNP-NCI]
SNP	CHST12 [GeneSNPs - Utah]  CHST12] [HGBASE - SRS]
HAPMAP	CHST12 [HAPMAP]
COSMIC	CHST12 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	CHST12
	General knowledge
Family Browser	CHST12 [UCSC Family Browser]
SOURCE	NM_018641
SMD	Hs.213088
SAGE	Hs.213088
GO	Golgi membrane [Amigo]  Golgi membrane
GO	protein binding [Amigo]  protein binding
GO	Golgi apparatus [Amigo]  Golgi apparatus
GO	carbohydrate metabolic process [Amigo]  carbohydrate metabolic process
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
GO	transferase activity [Amigo]  transferase activity
GO	integral to Golgi membrane [Amigo]  integral to Golgi membrane
GO	dermatan sulfate biosynthetic process [Amigo]  dermatan sulfate biosynthetic process
GO	dermatan sulfate biosynthetic process [Amigo]  dermatan sulfate biosynthetic process
GO	chondroitin 4-sulfotransferase activity [Amigo]  chondroitin 4-sulfotransferase activity
GO	chondroitin 4-sulfotransferase activity [Amigo]  chondroitin 4-sulfotransferase activity
GO	3'-phosphoadenosine 5'-phosphosulfate binding [Amigo]  3'-phosphoadenosine 5'-phosphosulfate binding
KEGG	Chondroitin sulfate biosynthesis
KEGG	Sulfur metabolism
KEGG	Glycan structures - biosynthesis 1
PubGene	CHST12
TreeFam	CHST12
CTD	55501 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CHST12 Related clones (RZPD - Berlin)
	PubMed
PubMed	9 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:07:46 2008