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CHST12 (carbohydrate (chondroitin 4) sulfotransferase 12)

Identity

Alias_namescarbohydrate (chondroitin 4) sulfotransferase 12
Alias_symbol (synonym)C4S-2
C4ST2
Other aliasC4ST-2
HGNC (Hugo) CHST12
LocusID (NCBI) 55501
Atlas_Id 46971
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 2443195 and ends at 2474216 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COL3A1 (2q32.2) / CHST12 (7p22.3)SDK1 (7p22.2) / CHST12 (7p22.3)SDK1 7p22.2 / CHST12 7p22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST12   17423
Cards
Entrez_Gene (NCBI)CHST12  55501  carbohydrate (chondroitin 4) sulfotransferase 12
AliasesC4S-2; C4ST-2; C4ST2
GeneCards (Weizmann)CHST12
Ensembl hg19 (Hinxton)ENSG00000136213 [Gene_View]  chr7:2443195-2474216 [Contig_View]  CHST12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136213 [Gene_View]  chr7:2443195-2474216 [Contig_View]  CHST12 [Vega]
ICGC DataPortalENSG00000136213
TCGA cBioPortalCHST12
AceView (NCBI)CHST12
Genatlas (Paris)CHST12
WikiGenes55501
SOURCE (Princeton)CHST12
Genetics Home Reference (NIH)CHST12
Genomic and cartography
GoldenPath hg19 (UCSC)CHST12  -     chr7:2443195-2474216 +  7p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHST12  -     7p22.3   [Description]    (hg38-Dec_2013)
EnsemblCHST12 - 7p22.3 [CytoView hg19]  CHST12 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBICHST12 [Mapview hg19]  CHST12 [Mapview hg38]
OMIM610129   
Gene and transcription
Genbank (Entrez)AF239822 AJ289131 AK223191 AK223211 AK313484
RefSeq transcript (Entrez)NM_001243794 NM_001243795 NM_018641
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_029854 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)CHST12
Cluster EST : UnigeneHs.744987 [ NCBI ]
CGAP (NCI)Hs.744987
Alternative Splicing GalleryENSG00000136213
Gene ExpressionCHST12 [ NCBI-GEO ]   CHST12 [ EBI - ARRAY_EXPRESS ]   CHST12 [ SEEK ]   CHST12 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55501
GTEX Portal (Tissue expression)CHST12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRB3
Splice isoforms : SwissVarQ9NRB3
Catalytic activity : Enzyme2.8.2.5 [ Enzyme-Expasy ]   2.8.2.52.8.2.5 [ IntEnz-EBI ]   2.8.2.5 [ BRENDA ]   2.8.2.5 [ KEGG ]   
PhosPhoSitePlusQ9NRB3
Domains : Interpro (EBI)Carb_sulfotransferase-rel    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)CHST12
DMDM Disease mutations55501
Blocks (Seattle)CHST12
SuperfamilyQ9NRB3
Human Protein AtlasENSG00000136213
Peptide AtlasQ9NRB3
HPRD13056
IPIIPI00299758   IPI00893343   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRB3
IntAct (EBI)Q9NRB3
FunCoupENSG00000136213
BioGRIDCHST12
STRING (EMBL)CHST12
ZODIACCHST12
Ontologies - Pathways
QuickGOQ9NRB3
Ontology : AmiGOGolgi membrane  membrane  carbohydrate biosynthetic process  integral component of Golgi membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  dermatan sulfate biosynthetic process  chondroitin 4-sulfotransferase activity  chondroitin 4-sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate binding  
Ontology : EGO-EBIGolgi membrane  membrane  carbohydrate biosynthetic process  integral component of Golgi membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  dermatan sulfate biosynthetic process  chondroitin 4-sulfotransferase activity  chondroitin 4-sulfotransferase activity  3'-phosphoadenosine 5'-phosphosulfate binding  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCHST12
Atlas of Cancer Signalling NetworkCHST12
Wikipedia pathwaysCHST12
Orthology - Evolution
OrthoDB55501
GeneTree (enSembl)ENSG00000136213
Phylogenetic Trees/Animal Genes : TreeFamCHST12
HOVERGENQ9NRB3
HOGENOMQ9NRB3
Homologs : HomoloGeneCHST12
Homology/Alignments : Family Browser (UCSC)CHST12
Gene fusions - Rearrangements
Fusion : MitelmanSDK1/CHST12 [7p22.2/7p22.3]  [t(7;7)(p22;p22)]  
Fusion: TCGASDK1 7p22.2 CHST12 7p22.3 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST12
dbVarCHST12
ClinVarCHST12
1000_GenomesCHST12 
Exome Variant ServerCHST12
ExAC (Exome Aggregation Consortium)CHST12 (select the gene name)
Genetic variants : HAPMAP55501
Genomic Variants (DGV)CHST12 [DGVbeta]
DECIPHER (Syndromes)7:2443195-2474216  ENSG00000136213
CONAN: Copy Number AnalysisCHST12 
Mutations
ICGC Data PortalCHST12 
TCGA Data PortalCHST12 
Broad Tumor PortalCHST12
OASIS PortalCHST12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST12
DgiDB (Drug Gene Interaction Database)CHST12
DoCM (Curated mutations)CHST12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST12 (select a term)
intoGenCHST12
Cancer3DCHST12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610129   
Orphanet
MedgenCHST12
Genetic Testing Registry CHST12
NextProtQ9NRB3 [Medical]
TSGene55501
GENETestsCHST12
Huge Navigator CHST12 [HugePedia]
snp3D : Map Gene to Disease55501
BioCentury BCIQCHST12
ClinGenCHST12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55501
Chemical/Pharm GKB GenePA134969008
Clinical trialCHST12
Miscellaneous
canSAR (ICR)CHST12 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST12
EVEXCHST12
GoPubMedCHST12
iHOPCHST12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:31 CET 2017

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