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CHST13 (carbohydrate (chondroitin 4) sulfotransferase 13)

Identity

Alias_namescarbohydrate (chondroitin 4) sulfotransferase 13
Alias_symbol (synonym)C4ST3
Other alias
HGNC (Hugo) CHST13
LocusID (NCBI) 166012
Atlas_Id 61820
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 126243131 and ends at 126262134 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHST13 (3q21.3) / DKK3 (11p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST13   21755
Cards
Entrez_Gene (NCBI)CHST13  166012  carbohydrate (chondroitin 4) sulfotransferase 13
AliasesC4ST3
GeneCards (Weizmann)CHST13
Ensembl hg19 (Hinxton)ENSG00000180767 [Gene_View]  chr3:126243131-126262134 [Contig_View]  CHST13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180767 [Gene_View]  chr3:126243131-126262134 [Contig_View]  CHST13 [Vega]
ICGC DataPortalENSG00000180767
TCGA cBioPortalCHST13
AceView (NCBI)CHST13
Genatlas (Paris)CHST13
WikiGenes166012
SOURCE (Princeton)CHST13
Genetics Home Reference (NIH)CHST13
Genomic and cartography
GoldenPath hg19 (UCSC)CHST13  -     chr3:126243131-126262134 +  3q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHST13  -     3q21.3   [Description]    (hg38-Dec_2013)
EnsemblCHST13 - 3q21.3 [CytoView hg19]  CHST13 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBICHST13 [Mapview hg19]  CHST13 [Mapview hg38]
OMIM610124   
Gene and transcription
Genbank (Entrez)AY120869 BC039390 BC045257 BC047236 BC103895
RefSeq transcript (Entrez)NM_152889
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_029855 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CHST13
Cluster EST : UnigeneHs.292375 [ NCBI ]
CGAP (NCI)Hs.292375
Alternative Splicing GalleryENSG00000180767
Gene ExpressionCHST13 [ NCBI-GEO ]   CHST13 [ EBI - ARRAY_EXPRESS ]   CHST13 [ SEEK ]   CHST13 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)166012
GTEX Portal (Tissue expression)CHST13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NET6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NET6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NET6
Splice isoforms : SwissVarQ8NET6
Catalytic activity : Enzyme2.8.2.5 [ Enzyme-Expasy ]   2.8.2.52.8.2.5 [ IntEnz-EBI ]   2.8.2.5 [ BRENDA ]   2.8.2.5 [ KEGG ]   
PhosPhoSitePlusQ8NET6
Domains : Interpro (EBI)Carb_sulfotransferase-rel    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)CHST13
DMDM Disease mutations166012
Blocks (Seattle)CHST13
SuperfamilyQ8NET6
Human Protein AtlasENSG00000180767
Peptide AtlasQ8NET6
HPRD13057
IPIIPI00168745   IPI00651715   
Protein Interaction databases
DIP (DOE-UCLA)Q8NET6
IntAct (EBI)Q8NET6
FunCoupENSG00000180767
BioGRIDCHST13
STRING (EMBL)CHST13
ZODIACCHST13
Ontologies - Pathways
QuickGOQ8NET6
Ontology : AmiGOGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  carbohydrate metabolic process  integral component of membrane  carbohydrate biosynthetic process  glycosaminoglycan metabolic process  chondroitin sulfate metabolic process  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  small molecule metabolic process  chondroitin 4-sulfotransferase activity  
Ontology : EGO-EBIGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  carbohydrate metabolic process  integral component of membrane  carbohydrate biosynthetic process  glycosaminoglycan metabolic process  chondroitin sulfate metabolic process  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  small molecule metabolic process  chondroitin 4-sulfotransferase activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCHST13
Atlas of Cancer Signalling NetworkCHST13
Wikipedia pathwaysCHST13
Orthology - Evolution
OrthoDB166012
GeneTree (enSembl)ENSG00000180767
Phylogenetic Trees/Animal Genes : TreeFamCHST13
HOVERGENQ8NET6
HOGENOMQ8NET6
Homologs : HomoloGeneCHST13
Homology/Alignments : Family Browser (UCSC)CHST13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST13
dbVarCHST13
ClinVarCHST13
1000_GenomesCHST13 
Exome Variant ServerCHST13
ExAC (Exome Aggregation Consortium)CHST13 (select the gene name)
Genetic variants : HAPMAP166012
Genomic Variants (DGV)CHST13 [DGVbeta]
DECIPHER (Syndromes)3:126243131-126262134  ENSG00000180767
CONAN: Copy Number AnalysisCHST13 
Mutations
ICGC Data PortalCHST13 
TCGA Data PortalCHST13 
Broad Tumor PortalCHST13
OASIS PortalCHST13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST13
DgiDB (Drug Gene Interaction Database)CHST13
DoCM (Curated mutations)CHST13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST13 (select a term)
intoGenCHST13
Cancer3DCHST13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610124   
Orphanet
MedgenCHST13
Genetic Testing Registry CHST13
NextProtQ8NET6 [Medical]
TSGene166012
GENETestsCHST13
Huge Navigator CHST13 [HugePedia]
snp3D : Map Gene to Disease166012
BioCentury BCIQCHST13
ClinGenCHST13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD166012
Chemical/Pharm GKB GenePA134976803
Clinical trialCHST13
Miscellaneous
canSAR (ICR)CHST13 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST13
EVEXCHST13
GoPubMedCHST13
iHOPCHST13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:28 CET 2017

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