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CHST14 (carbohydrate sulfotransferase 14)

Identity

Alias_namesD4ST1
dermatan 4 sulfotransferase 1
carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14
carbohydrate (dermatan 4) sulfotransferase 14
Alias_symbol (synonym)HD4ST
D4ST-1
Other aliasATCS
EDSMC1
HNK1ST
HGNC (Hugo) CHST14
LocusID (NCBI) 113189
Atlas_Id 61821
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40470961 and ends at 40473158 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
POLD2 (7p13) / CHST14 (15q15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST14   24464
LRG (Locus Reference Genomic)LRG_600
Cards
Entrez_Gene (NCBI)CHST14  113189  carbohydrate sulfotransferase 14
AliasesATCS; D4ST1; EDSMC1; HNK1ST
GeneCards (Weizmann)CHST14
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:40470961-40473158 [Contig_View]  CHST14 [Vega]
TCGA cBioPortalCHST14
AceView (NCBI)CHST14
Genatlas (Paris)CHST14
WikiGenes113189
SOURCE (Princeton)CHST14
Genetics Home Reference (NIH)CHST14
Genomic and cartography
GoldenPath hg38 (UCSC)CHST14  -     chr15:40470961-40473158 +  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST14  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblCHST14 - 15q15.1 [CytoView hg19]  CHST14 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBICHST14 [Mapview hg19]  CHST14 [Mapview hg38]
OMIM601776   608429   
Gene and transcription
Genbank (Entrez)AB066595 AF282905 AF401222 AK074739 AY358446
RefSeq transcript (Entrez)NM_130468
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHST14
Cluster EST : UnigeneHs.442449 [ NCBI ]
CGAP (NCI)Hs.442449
Gene ExpressionCHST14 [ NCBI-GEO ]   CHST14 [ EBI - ARRAY_EXPRESS ]   CHST14 [ SEEK ]   CHST14 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113189
GTEX Portal (Tissue expression)CHST14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCH0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCH0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCH0
Splice isoforms : SwissVarQ8NCH0
Catalytic activity : Enzyme2.8.2.35 [ Enzyme-Expasy ]   2.8.2.352.8.2.35 [ IntEnz-EBI ]   2.8.2.35 [ BRENDA ]   2.8.2.35 [ KEGG ]   
PhosPhoSitePlusQ8NCH0
Domains : Interpro (EBI)Carb_sulfotrans_8-10    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)CHST14
DMDM Disease mutations113189
Blocks (Seattle)CHST14
SuperfamilyQ8NCH0
Peptide AtlasQ8NCH0
HPRD16780
IPIIPI00044326   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCH0
IntAct (EBI)Q8NCH0
BioGRIDCHST14
STRING (EMBL)CHST14
ZODIACCHST14
Ontologies - Pathways
QuickGOQ8NCH0
Ontology : AmiGOGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  N-acetylgalactosamine 4-O-sulfotransferase activity  integral component of membrane  carbohydrate biosynthetic process  dermatan sulfate biosynthetic process  phosphate ion binding  dermatan sulfate proteoglycan metabolic process  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  N-acetylgalactosamine 4-O-sulfotransferase activity  integral component of membrane  carbohydrate biosynthetic process  dermatan sulfate biosynthetic process  phosphate ion binding  dermatan sulfate proteoglycan metabolic process  extracellular exosome  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCHST14
Atlas of Cancer Signalling NetworkCHST14
Wikipedia pathwaysCHST14
Orthology - Evolution
OrthoDB113189
Phylogenetic Trees/Animal Genes : TreeFamCHST14
HOVERGENQ8NCH0
HOGENOMQ8NCH0
Homologs : HomoloGeneCHST14
Homology/Alignments : Family Browser (UCSC)CHST14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST14
dbVarCHST14
ClinVarCHST14
1000_GenomesCHST14 
Exome Variant ServerCHST14
ExAC (Exome Aggregation Consortium)CHST14 (select the gene name)
Genetic variants : HAPMAP113189
Genomic Variants (DGV)CHST14 [DGVbeta]
DECIPHERCHST14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST14 
Mutations
ICGC Data PortalCHST14 
TCGA Data PortalCHST14 
Broad Tumor PortalCHST14
OASIS PortalCHST14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Ehlers Danlos Syndrome Variant Database
BioMutasearch CHST14
DgiDB (Drug Gene Interaction Database)CHST14
DoCM (Curated mutations)CHST14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST14 (select a term)
intoGenCHST14
Cancer3DCHST14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601776    608429   
Orphanet3480   
MedgenCHST14
Genetic Testing Registry CHST14
NextProtQ8NCH0 [Medical]
TSGene113189
GENETestsCHST14
Target ValidationCHST14
Huge Navigator CHST14 [HugePedia]
snp3D : Map Gene to Disease113189
BioCentury BCIQCHST14
ClinGenCHST14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113189
Chemical/Pharm GKB GenePA162382258
Clinical trialCHST14
Miscellaneous
canSAR (ICR)CHST14 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST14
EVEXCHST14
GoPubMedCHST14
iHOPCHST14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:49 CEST 2017

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