Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CHST15 (carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15)

Identity

Alias_namescarbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
Alias_symbol (synonym)GALNAC4S-6ST
BRAG
KIAA0598
Other alias
HGNC (Hugo) CHST15
LocusID (NCBI) 51363
Atlas_Id 53475
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 125767182 and ends at 125853123 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHST15 (10q26.13) / ISLR (15q24.1)CHST15 (10q26.13) / RBM4B (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST15   18137
Cards
Entrez_Gene (NCBI)CHST15  51363  carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
AliasesBRAG; GALNAC4S-6ST
GeneCards (Weizmann)CHST15
Ensembl hg19 (Hinxton)ENSG00000182022 [Gene_View]  chr10:125767182-125853123 [Contig_View]  CHST15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182022 [Gene_View]  chr10:125767182-125853123 [Contig_View]  CHST15 [Vega]
ICGC DataPortalENSG00000182022
TCGA cBioPortalCHST15
AceView (NCBI)CHST15
Genatlas (Paris)CHST15
WikiGenes51363
SOURCE (Princeton)CHST15
Genetics Home Reference (NIH)CHST15
Genomic and cartography
GoldenPath hg19 (UCSC)CHST15  -     chr10:125767182-125853123 -  10q26.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHST15  -     10q26.13   [Description]    (hg38-Dec_2013)
EnsemblCHST15 - 10q26.13 [CytoView hg19]  CHST15 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBICHST15 [Mapview hg19]  CHST15 [Mapview hg38]
OMIM608277   
Gene and transcription
Genbank (Entrez)AB011170 AB062423 AF026477 AK294961 AK299546
RefSeq transcript (Entrez)NM_001270764 NM_001270765 NM_014863 NM_015892
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_032891 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)CHST15
Cluster EST : UnigeneHs.745222 [ NCBI ]
CGAP (NCI)Hs.745222
Alternative Splicing GalleryENSG00000182022
Gene ExpressionCHST15 [ NCBI-GEO ]   CHST15 [ EBI - ARRAY_EXPRESS ]   CHST15 [ SEEK ]   CHST15 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51363
GTEX Portal (Tissue expression)CHST15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7LFX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7LFX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7LFX5
Splice isoforms : SwissVarQ7LFX5
Catalytic activity : Enzyme2.8.2.33 [ Enzyme-Expasy ]   2.8.2.332.8.2.33 [ IntEnz-EBI ]   2.8.2.33 [ BRENDA ]   2.8.2.33 [ KEGG ]   
PhosPhoSitePlusQ7LFX5
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)CHST15
DMDM Disease mutations51363
Blocks (Seattle)CHST15
SuperfamilyQ7LFX5
Human Protein AtlasENSG00000182022
Peptide AtlasQ7LFX5
HPRD12203
IPIIPI00183321   IPI00384334   IPI01013186   IPI00909972   
Protein Interaction databases
DIP (DOE-UCLA)Q7LFX5
IntAct (EBI)Q7LFX5
FunCoupENSG00000182022
BioGRIDCHST15
STRING (EMBL)CHST15
ZODIACCHST15
Ontologies - Pathways
QuickGOQ7LFX5
Ontology : AmiGOGolgi membrane  integral component of membrane  hexose biosynthetic process  chondroitin sulfate biosynthetic process  3'-phosphoadenosine 5'-phosphosulfate binding  N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity  N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity  
Ontology : EGO-EBIGolgi membrane  integral component of membrane  hexose biosynthetic process  chondroitin sulfate biosynthetic process  3'-phosphoadenosine 5'-phosphosulfate binding  N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity  N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCHST15
Atlas of Cancer Signalling NetworkCHST15
Wikipedia pathwaysCHST15
Orthology - Evolution
OrthoDB51363
GeneTree (enSembl)ENSG00000182022
Phylogenetic Trees/Animal Genes : TreeFamCHST15
HOVERGENQ7LFX5
HOGENOMQ7LFX5
Homologs : HomoloGeneCHST15
Homology/Alignments : Family Browser (UCSC)CHST15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST15
dbVarCHST15
ClinVarCHST15
1000_GenomesCHST15 
Exome Variant ServerCHST15
ExAC (Exome Aggregation Consortium)CHST15 (select the gene name)
Genetic variants : HAPMAP51363
Genomic Variants (DGV)CHST15 [DGVbeta]
DECIPHER (Syndromes)10:125767182-125853123  ENSG00000182022
CONAN: Copy Number AnalysisCHST15 
Mutations
ICGC Data PortalCHST15 
TCGA Data PortalCHST15 
Broad Tumor PortalCHST15
OASIS PortalCHST15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST15
DgiDB (Drug Gene Interaction Database)CHST15
DoCM (Curated mutations)CHST15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST15 (select a term)
intoGenCHST15
Cancer3DCHST15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608277   
Orphanet
MedgenCHST15
Genetic Testing Registry CHST15
NextProtQ7LFX5 [Medical]
TSGene51363
GENETestsCHST15
Huge Navigator CHST15 [HugePedia]
snp3D : Map Gene to Disease51363
BioCentury BCIQCHST15
ClinGenCHST15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51363
Chemical/Pharm GKB GenePA165548385
Clinical trialCHST15
Miscellaneous
canSAR (ICR)CHST15 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST15
EVEXCHST15
GoPubMedCHST15
iHOPCHST15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:56:35 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.