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CHST15 (carbohydrate sulfotransferase 15)

Identity

Alias (NCBI)BRAG
GALNAC4S-6ST
HGNC (Hugo) CHST15
HGNC Alias symbGALNAC4S-6ST
BRAG
KIAA0598
HGNC Alias nameB cell RAG associated protein
 N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase
HGNC Previous namecarbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
LocusID (NCBI) 51363
Atlas_Id 53475
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 124007668 and ends at 124092406 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHST15 (10q26.13) / ISLR (15q24.1)CHST15 (10q26.13) / RBM4B (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CHST15   18137
Cards
Entrez_Gene (NCBI)CHST15    carbohydrate sulfotransferase 15
AliasesBRAG; GALNAC4S-6ST
GeneCards (Weizmann)CHST15
Ensembl hg19 (Hinxton)ENSG00000182022 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182022 [Gene_View]  ENSG00000182022 [Sequence]  chr10:124007668-124092406 [Contig_View]  CHST15 [Vega]
ICGC DataPortalENSG00000182022
TCGA cBioPortalCHST15
AceView (NCBI)CHST15
Genatlas (Paris)CHST15
SOURCE (Princeton)CHST15
Genetics Home Reference (NIH)CHST15
Genomic and cartography
GoldenPath hg38 (UCSC)CHST15  -     chr10:124007668-124092406 -  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST15  -     10q26.13   [Description]    (hg19-Feb_2009)
GoldenPathCHST15 - 10q26.13 [CytoView hg19]  CHST15 - 10q26.13 [CytoView hg38]
ImmunoBaseENSG00000182022
Genome Data Viewer NCBICHST15 [Mapview hg19]  
OMIM608277   
Gene and transcription
Genbank (Entrez)AB011170 AB062423 AF026477 AK294961 AK299546
RefSeq transcript (Entrez)NM_001270764 NM_001270765 NM_014863 NM_015892
Consensus coding sequences : CCDS (NCBI)CHST15
Gene ExpressionCHST15 [ NCBI-GEO ]   CHST15 [ EBI - ARRAY_EXPRESS ]   CHST15 [ SEEK ]   CHST15 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST15 [ Firebrowse - Broad ]
GenevisibleExpression of CHST15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51363
GTEX Portal (Tissue expression)CHST15
Human Protein AtlasENSG00000182022-CHST15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7LFX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7LFX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7LFX5
Catalytic activity : Enzyme2.8.2.33 [ Enzyme-Expasy ]   2.8.2.332.8.2.33 [ IntEnz-EBI ]   2.8.2.33 [ BRENDA ]   2.8.2.33 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ7LFX5
Domains : Interpro (EBI)P-loop_NTPase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CHST15
SuperfamilyQ7LFX5
AlphaFold pdb e-kbQ7LFX5   
Human Protein Atlas [tissue]ENSG00000182022-CHST15 [tissue]
HPRD12203
Protein Interaction databases
DIP (DOE-UCLA)Q7LFX5
IntAct (EBI)Q7LFX5
BioGRIDCHST15
STRING (EMBL)CHST15
ZODIACCHST15
Ontologies - Pathways
QuickGOQ7LFX5
Ontology : AmiGOGolgi membrane  protein binding  integral component of membrane  hexose biosynthetic process  hexose biosynthetic process  chondroitin sulfate biosynthetic process  3'-phosphoadenosine 5'-phosphosulfate binding  N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity  N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity  
Ontology : EGO-EBIGolgi membrane  protein binding  integral component of membrane  hexose biosynthetic process  hexose biosynthetic process  chondroitin sulfate biosynthetic process  3'-phosphoadenosine 5'-phosphosulfate binding  N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity  N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCHST15
Atlas of Cancer Signalling NetworkCHST15
Wikipedia pathwaysCHST15
Orthology - Evolution
OrthoDB51363
GeneTree (enSembl)ENSG00000182022
Phylogenetic Trees/Animal Genes : TreeFamCHST15
Homologs : HomoloGeneCHST15
Homology/Alignments : Family Browser (UCSC)CHST15
Gene fusions - Rearrangements
Fusion : QuiverCHST15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST15
dbVarCHST15
ClinVarCHST15
MonarchCHST15
1000_GenomesCHST15 
Exome Variant ServerCHST15
GNOMAD BrowserENSG00000182022
Varsome BrowserCHST15
ACMGCHST15 variants
VarityQ7LFX5
Genomic Variants (DGV)CHST15 [DGVbeta]
DECIPHERCHST15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST15 
Mutations
ICGC Data PortalCHST15 
TCGA Data PortalCHST15 
Broad Tumor PortalCHST15
OASIS PortalCHST15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCHST15
Mutations and Diseases : HGMDCHST15
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCHST15
DgiDB (Drug Gene Interaction Database)CHST15
DoCM (Curated mutations)CHST15
CIViC (Clinical Interpretations of Variants in Cancer)CHST15
Cancer3DCHST15
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608277   
Orphanet
DisGeNETCHST15
MedgenCHST15
Genetic Testing Registry CHST15
NextProtQ7LFX5 [Medical]
GENETestsCHST15
Target ValidationCHST15
Huge Navigator CHST15 [HugePedia]
ClinGenCHST15
Clinical trials, drugs, therapy
MyCancerGenomeCHST15
Protein Interactions : CTDCHST15
Pharm GKB GenePA165548385
PharosQ7LFX5
Clinical trialCHST15
Miscellaneous
canSAR (ICR)CHST15
HarmonizomeCHST15
DataMed IndexCHST15
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCHST15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:04:01 CEST 2021

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