Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CHST2 (carbohydrate sulfotransferase 2)

Identity

Alias_namescarbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2
Alias_symbol (synonym)C6ST
Other aliasGST-2
GST2
Gn6ST-1
HEL-S-75
glcNAc6ST-1
HGNC (Hugo) CHST2
LocusID (NCBI) 9435
Atlas_Id 49854
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 142838618 and ends at 142842856 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHST2 (3q24) / CLN6 (15q23)CLN6 (15q23) / CHST2 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST2   1970
Cards
Entrez_Gene (NCBI)CHST2  9435  carbohydrate sulfotransferase 2
AliasesC6ST; GST-2; GST2; Gn6ST-1; 
HEL-S-75; glcNAc6ST-1
GeneCards (Weizmann)CHST2
Ensembl hg19 (Hinxton)ENSG00000175040 [Gene_View]  chr3:142838618-142842856 [Contig_View]  CHST2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175040 [Gene_View]  chr3:142838618-142842856 [Contig_View]  CHST2 [Vega]
ICGC DataPortalENSG00000175040
TCGA cBioPortalCHST2
AceView (NCBI)CHST2
Genatlas (Paris)CHST2
WikiGenes9435
SOURCE (Princeton)CHST2
Genetics Home Reference (NIH)CHST2
Genomic and cartography
GoldenPath hg19 (UCSC)CHST2  -     chr3:142838618-142842856 +  3q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHST2  -     3q24   [Description]    (hg38-Dec_2013)
EnsemblCHST2 - 3q24 [CytoView hg19]  CHST2 - 3q24 [CytoView hg38]
Mapping of homologs : NCBICHST2 [Mapview hg19]  CHST2 [Mapview hg38]
OMIM603798   
Gene and transcription
Genbank (Entrez)AB014679 AB014680 AB021124 AF083066 AK023268
RefSeq transcript (Entrez)NM_004267
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_029828 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CHST2
Cluster EST : UnigeneHs.529249 [ NCBI ]
CGAP (NCI)Hs.529249
Alternative Splicing GalleryENSG00000175040
Gene ExpressionCHST2 [ NCBI-GEO ]   CHST2 [ EBI - ARRAY_EXPRESS ]   CHST2 [ SEEK ]   CHST2 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9435
GTEX Portal (Tissue expression)CHST2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4C5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4C5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4C5
Splice isoforms : SwissVarQ9Y4C5
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusQ9Y4C5
Domains : Interpro (EBI)Carbohydrate_sulfotransferase    P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)CHST2
DMDM Disease mutations9435
Blocks (Seattle)CHST2
SuperfamilyQ9Y4C5
Human Protein AtlasENSG00000175040
Peptide AtlasQ9Y4C5
HPRD04814
IPIIPI00098769   IPI00759564   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4C5
IntAct (EBI)Q9Y4C5
FunCoupENSG00000175040
BioGRIDCHST2
STRING (EMBL)CHST2
ZODIACCHST2
Ontologies - Pathways
QuickGOQ9Y4C5
Ontology : AmiGOGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  N-acetylglucosamine 6-O-sulfotransferase activity  trans-Golgi network  carbohydrate metabolic process  N-acetylglucosamine metabolic process  sulfur compound metabolic process  inflammatory response  multicellular organism development  sulfotransferase activity  integral component of membrane  keratan sulfate biosynthetic process  intrinsic component of Golgi membrane  
Ontology : EGO-EBIGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  N-acetylglucosamine 6-O-sulfotransferase activity  trans-Golgi network  carbohydrate metabolic process  N-acetylglucosamine metabolic process  sulfur compound metabolic process  inflammatory response  multicellular organism development  sulfotransferase activity  integral component of membrane  keratan sulfate biosynthetic process  intrinsic component of Golgi membrane  
Pathways : KEGGGlycosaminoglycan biosynthesis - keratan sulfate   
NDEx NetworkCHST2
Atlas of Cancer Signalling NetworkCHST2
Wikipedia pathwaysCHST2
Orthology - Evolution
OrthoDB9435
GeneTree (enSembl)ENSG00000175040
Phylogenetic Trees/Animal Genes : TreeFamCHST2
HOVERGENQ9Y4C5
HOGENOMQ9Y4C5
Homologs : HomoloGeneCHST2
Homology/Alignments : Family Browser (UCSC)CHST2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST2
dbVarCHST2
ClinVarCHST2
1000_GenomesCHST2 
Exome Variant ServerCHST2
ExAC (Exome Aggregation Consortium)CHST2 (select the gene name)
Genetic variants : HAPMAP9435
Genomic Variants (DGV)CHST2 [DGVbeta]
DECIPHER (Syndromes)3:142838618-142842856  ENSG00000175040
CONAN: Copy Number AnalysisCHST2 
Mutations
ICGC Data PortalCHST2 
TCGA Data PortalCHST2 
Broad Tumor PortalCHST2
OASIS PortalCHST2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST2
DgiDB (Drug Gene Interaction Database)CHST2
DoCM (Curated mutations)CHST2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST2 (select a term)
intoGenCHST2
Cancer3DCHST2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603798   
Orphanet
MedgenCHST2
Genetic Testing Registry CHST2
NextProtQ9Y4C5 [Medical]
TSGene9435
GENETestsCHST2
Huge Navigator CHST2 [HugePedia]
snp3D : Map Gene to Disease9435
BioCentury BCIQCHST2
ClinGenCHST2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9435
Chemical/Pharm GKB GenePA26502
Clinical trialCHST2
Miscellaneous
canSAR (ICR)CHST2 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST2
EVEXCHST2
GoPubMedCHST2
iHOPCHST2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:00:32 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.