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CHST3 (carbohydrate sulfotransferase 3)

Identity

Alias (NCBI)C6ST
C6ST1
HSD
HGNC (Hugo) CHST3
HGNC Alias symbC6ST
C6ST1
HGNC Alias namechondroitin 6 sulfotransferase 1
HGNC Previous namecarbohydrate (chondroitin 6) sulfotransferase 3
LocusID (NCBI) 9469
Atlas_Id 61822
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71964362 and ends at 72013564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHST3 (10q22.1) / CDH23 (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  CHST3/CDH23 (10q22)


External links

Nomenclature
HGNC (Hugo)CHST3   1971
Cards
Entrez_Gene (NCBI)CHST3    carbohydrate sulfotransferase 3
AliasesC6ST; C6ST1; HSD
GeneCards (Weizmann)CHST3
Ensembl hg19 (Hinxton)ENSG00000122863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122863 [Gene_View]  ENSG00000122863 [Sequence]  chr10:71964362-72013564 [Contig_View]  CHST3 [Vega]
ICGC DataPortalENSG00000122863
TCGA cBioPortalCHST3
AceView (NCBI)CHST3
Genatlas (Paris)CHST3
SOURCE (Princeton)CHST3
Genetics Home Reference (NIH)CHST3
Genomic and cartography
GoldenPath hg38 (UCSC)CHST3  -     chr10:71964362-72013564 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST3  -     10q22.1   [Description]    (hg19-Feb_2009)
GoldenPathCHST3 - 10q22.1 [CytoView hg19]  CHST3 - 10q22.1 [CytoView hg38]
ImmunoBaseENSG00000122863
genome Data Viewer NCBICHST3 [Mapview hg19]  
OMIM143095   245600   603799   
Gene and transcription
Genbank (Entrez)AB012192 AB017915 AI041015 AK025251 BC033183
RefSeq transcript (Entrez)NM_004273
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHST3
Alternative Splicing GalleryENSG00000122863
Gene ExpressionCHST3 [ NCBI-GEO ]   CHST3 [ EBI - ARRAY_EXPRESS ]   CHST3 [ SEEK ]   CHST3 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST3 [ Firebrowse - Broad ]
GenevisibleExpression of CHST3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9469
GTEX Portal (Tissue expression)CHST3
Human Protein AtlasENSG00000122863-CHST3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7LGC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7LGC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7LGC8
Splice isoforms : SwissVarQ7LGC8
Catalytic activity : Enzyme2.8.2.17 [ Enzyme-Expasy ]   2.8.2.172.8.2.17 [ IntEnz-EBI ]   2.8.2.17 [ BRENDA ]   2.8.2.17 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ7LGC8
Domains : Interpro (EBI)Carbohydrate_sulfotransferase    P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)CHST3
Blocks (Seattle)CHST3
SuperfamilyQ7LGC8
Human Protein Atlas [tissue]ENSG00000122863-CHST3 [tissue]
Peptide AtlasQ7LGC8
HPRD07052
IPIIPI00306853   
Protein Interaction databases
DIP (DOE-UCLA)Q7LGC8
IntAct (EBI)Q7LGC8
BioGRIDCHST3
STRING (EMBL)CHST3
ZODIACCHST3
Ontologies - Pathways
QuickGOQ7LGC8
Ontology : AmiGOGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  trans-Golgi network  carbohydrate metabolic process  N-acetylglucosamine metabolic process  sulfur compound metabolic process  sulfur compound metabolic process  sulfotransferase activity  chondroitin 6-sulfotransferase activity  chondroitin 6-sulfotransferase activity  integral component of membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  
Ontology : EGO-EBIGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  trans-Golgi network  carbohydrate metabolic process  N-acetylglucosamine metabolic process  sulfur compound metabolic process  sulfur compound metabolic process  sulfotransferase activity  chondroitin 6-sulfotransferase activity  chondroitin 6-sulfotransferase activity  integral component of membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  
Pathways : KEGGGlycan structures - biosynthesis 1    Chondroitin sulfate biosynthesis   
NDEx NetworkCHST3
Atlas of Cancer Signalling NetworkCHST3
Wikipedia pathwaysCHST3
Orthology - Evolution
OrthoDB9469
GeneTree (enSembl)ENSG00000122863
Phylogenetic Trees/Animal Genes : TreeFamCHST3
HOGENOMQ7LGC8
Homologs : HomoloGeneCHST3
Homology/Alignments : Family Browser (UCSC)CHST3
Gene fusions - Rearrangements
Fusion : QuiverCHST3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST3 [hg38]
dbVarCHST3
ClinVarCHST3
MonarchCHST3
1000_GenomesCHST3 
Exome Variant ServerCHST3
GNOMAD BrowserENSG00000122863
Varsome BrowserCHST3
Genomic Variants (DGV)CHST3 [DGVbeta]
DECIPHERCHST3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST3 
Mutations
ICGC Data PortalCHST3 
TCGA Data PortalCHST3 
Broad Tumor PortalCHST3
OASIS PortalCHST3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCHST3
Mutations and Diseases : HGMDCHST3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST3
DgiDB (Drug Gene Interaction Database)CHST3
DoCM (Curated mutations)CHST3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST3 (select a term)
intoGenCHST3
Cancer3DCHST3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM143095    245600    603799   
Orphanet20058   
DisGeNETCHST3
MedgenCHST3
Genetic Testing Registry CHST3
NextProtQ7LGC8 [Medical]
GENETestsCHST3
Target ValidationCHST3
Huge Navigator CHST3 [HugePedia]
ClinGenCHST3
Clinical trials, drugs, therapy
MyCancerGenomeCHST3
Protein Interactions : CTD
Pharm GKB GenePA26503
Clinical trialCHST3
Miscellaneous
canSAR (ICR)CHST3 (select the gene name)
HarmonizomeCHST3
DataMed IndexCHST3
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST3
EVEXCHST3
GoPubMedCHST3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:49:58 CET 2020

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