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CHST3 (carbohydrate sulfotransferase 3)

Identity

Alias_namescarbohydrate (chondroitin 6) sulfotransferase 3
Alias_symbol (synonym)C6ST
C6ST1
Other aliasHSD
HGNC (Hugo) CHST3
LocusID (NCBI) 9469
Atlas_Id 61822
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71964362 and ends at 72013564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHST3 (10q22.1) / CDH23 (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST3   1971
Cards
Entrez_Gene (NCBI)CHST3  9469  carbohydrate sulfotransferase 3
AliasesC6ST; C6ST1; HSD
GeneCards (Weizmann)CHST3
Ensembl hg19 (Hinxton)ENSG00000122863 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122863 [Gene_View]  chr10:71964362-72013564 [Contig_View]  CHST3 [Vega]
ICGC DataPortalENSG00000122863
TCGA cBioPortalCHST3
AceView (NCBI)CHST3
Genatlas (Paris)CHST3
WikiGenes9469
SOURCE (Princeton)CHST3
Genetics Home Reference (NIH)CHST3
Genomic and cartography
GoldenPath hg38 (UCSC)CHST3  -     chr10:71964362-72013564 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST3  -     10q22.1   [Description]    (hg19-Feb_2009)
EnsemblCHST3 - 10q22.1 [CytoView hg19]  CHST3 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBICHST3 [Mapview hg19]  CHST3 [Mapview hg38]
OMIM143095   245600   603799   
Gene and transcription
Genbank (Entrez)AB012192 AB017915 AI041015 AK025251 BC033183
RefSeq transcript (Entrez)NM_004273
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHST3
Cluster EST : UnigeneHs.158304 [ NCBI ]
CGAP (NCI)Hs.158304
Alternative Splicing GalleryENSG00000122863
Gene ExpressionCHST3 [ NCBI-GEO ]   CHST3 [ EBI - ARRAY_EXPRESS ]   CHST3 [ SEEK ]   CHST3 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9469
GTEX Portal (Tissue expression)CHST3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7LGC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7LGC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7LGC8
Splice isoforms : SwissVarQ7LGC8
Catalytic activity : Enzyme2.8.2.17 [ Enzyme-Expasy ]   2.8.2.172.8.2.17 [ IntEnz-EBI ]   2.8.2.17 [ BRENDA ]   2.8.2.17 [ KEGG ]   
PhosPhoSitePlusQ7LGC8
Domains : Interpro (EBI)Carbohydrate_sulfotransferase    P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)CHST3
DMDM Disease mutations9469
Blocks (Seattle)CHST3
SuperfamilyQ7LGC8
Human Protein AtlasENSG00000122863
Peptide AtlasQ7LGC8
HPRD07052
IPIIPI00306853   
Protein Interaction databases
DIP (DOE-UCLA)Q7LGC8
IntAct (EBI)Q7LGC8
FunCoupENSG00000122863
BioGRIDCHST3
STRING (EMBL)CHST3
ZODIACCHST3
Ontologies - Pathways
QuickGOQ7LGC8
Ontology : AmiGOGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  carbohydrate metabolic process  sulfur compound metabolic process  sulfotransferase activity  chondroitin 6-sulfotransferase activity  chondroitin 6-sulfotransferase activity  integral component of membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  
Ontology : EGO-EBIGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  carbohydrate metabolic process  sulfur compound metabolic process  sulfotransferase activity  chondroitin 6-sulfotransferase activity  chondroitin 6-sulfotransferase activity  integral component of membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCHST3
Atlas of Cancer Signalling NetworkCHST3
Wikipedia pathwaysCHST3
Orthology - Evolution
OrthoDB9469
GeneTree (enSembl)ENSG00000122863
Phylogenetic Trees/Animal Genes : TreeFamCHST3
HOVERGENQ7LGC8
HOGENOMQ7LGC8
Homologs : HomoloGeneCHST3
Homology/Alignments : Family Browser (UCSC)CHST3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST3
dbVarCHST3
ClinVarCHST3
1000_GenomesCHST3 
Exome Variant ServerCHST3
ExAC (Exome Aggregation Consortium)CHST3 (select the gene name)
Genetic variants : HAPMAP9469
Genomic Variants (DGV)CHST3 [DGVbeta]
DECIPHERCHST3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST3 
Mutations
ICGC Data PortalCHST3 
TCGA Data PortalCHST3 
Broad Tumor PortalCHST3
OASIS PortalCHST3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST3
DgiDB (Drug Gene Interaction Database)CHST3
DoCM (Curated mutations)CHST3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST3 (select a term)
intoGenCHST3
Cancer3DCHST3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM143095    245600    603799   
Orphanet20058   
MedgenCHST3
Genetic Testing Registry CHST3
NextProtQ7LGC8 [Medical]
TSGene9469
GENETestsCHST3
Target ValidationCHST3
Huge Navigator CHST3 [HugePedia]
snp3D : Map Gene to Disease9469
BioCentury BCIQCHST3
ClinGenCHST3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9469
Chemical/Pharm GKB GenePA26503
Clinical trialCHST3
Miscellaneous
canSAR (ICR)CHST3 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST3
EVEXCHST3
GoPubMedCHST3
iHOPCHST3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:49 CEST 2017

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