Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CHST4 (carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4)

Identity

Other namesGST3
GlcNAc6ST2
HECGLCNAC6ST
LSST
HGNC (Hugo) CHST4
LocusID (NCBI) 10164
Location 16q22.2
Location_base_pair Starts at 71560154 and ends at 71572493 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHST4   1972
Cards
Entrez_Gene (NCBI)CHST4  10164  carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4
GeneCards (Weizmann)CHST4
Ensembl (Hinxton)ENSG00000140835 [Gene_View]  chr16:71560154-71572493 [Contig_View]  CHST4 [Vega]
ICGC DataPortalENSG00000140835
cBioPortalCHST4
AceView (NCBI)CHST4
Genatlas (Paris)CHST4
WikiGenes10164
SOURCE (Princeton)NM_001166395 NM_005769
Genomic and cartography
GoldenPath (UCSC)CHST4  -  16q22.2   chr16:71560154-71572493 +  16q22.2   [Description]    (hg19-Feb_2009)
EnsemblCHST4 - 16q22.2 [CytoView]
Mapping of homologs : NCBICHST4 [Mapview]
Gene and transcription
Genbank (Entrez)AF131235 AF149783 AF280088 AK026635 AK074746
RefSeq transcript (Entrez)NM_001166395 NM_005769
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_029801 NT_010498 NW_001838325 NW_004929402
Consensus coding sequences : CCDS (NCBI)CHST4
Cluster EST : UnigeneHs.251383 [ NCBI ]
CGAP (NCI)Hs.251383
Alternative Splicing : Fast-db (Paris)GSHG0011334
Alternative Splicing GalleryENSG00000140835
Gene ExpressionCHST4 [ NCBI-GEO ]     CHST4 [ SEEK ]   CHST4 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCG5 (Uniprot)
NextProtQ8NCG5  [Medical]
With graphics : InterProQ8NCG5
Splice isoforms : SwissVarQ8NCG5 (Swissvar)
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
Domains : Interpro (EBI)Carbohydrate_sulfotransferase [organisation]   P-loop_NTPase [organisation]   Sulfotransferase_dom [organisation]  
Related proteins : CluSTrQ8NCG5
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
DMDM Disease mutations10164
Blocks (Seattle)Q8NCG5
Human Protein AtlasENSG00000140835 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8NCG5
HPRD07477
IPIIPI00301494   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCG5
IntAct (EBI)Q8NCG5
FunCoupENSG00000140835
BioGRIDCHST4
InParanoidQ8NCG5
Interologous Interaction database Q8NCG5
IntegromeDBCHST4
STRING (EMBL)CHST4
Ontologies - Pathways
Ontology : AmiGON-acetylglucosamine 6-O-sulfotransferase activity  trans-Golgi network  carbohydrate metabolic process  N-acetylglucosamine metabolic process  protein sulfation  sulfur compound metabolic process  cellular component movement  inflammatory response  immune response  cell adhesion  cell-cell signaling  sulfotransferase activity  integral component of membrane  intrinsic component of Golgi membrane  leukocyte tethering or rolling  
Ontology : EGO-EBIN-acetylglucosamine 6-O-sulfotransferase activity  trans-Golgi network  carbohydrate metabolic process  N-acetylglucosamine metabolic process  protein sulfation  sulfur compound metabolic process  cellular component movement  inflammatory response  immune response  cell adhesion  cell-cell signaling  sulfotransferase activity  integral component of membrane  intrinsic component of Golgi membrane  leukocyte tethering or rolling  
Pathways : KEGGGlycosaminoglycan biosynthesis - keratan sulfate   
Protein Interaction DatabaseCHST4
Wikipedia pathwaysCHST4
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CHST4
snp3D : Map Gene to Disease10164
SNP (GeneSNP Utah)CHST4
SNP : HGBaseCHST4
Genetic variants : HAPMAPCHST4
Exome VariantCHST4
1000_GenomesCHST4 
ICGC programENSG00000140835 
Somatic Mutations in Cancer : COSMICCHST4 
CONAN: Copy Number AnalysisCHST4 
Mutations and Diseases : HGMDCHST4
Genomic VariantsCHST4  CHST4 [DGVbeta]
dbVarCHST4
ClinVarCHST4
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM
MedgenCHST4
GENETestsCHST4
Disease Genetic AssociationCHST4
Huge Navigator CHST4 [HugePedia]  CHST4 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCHST4
Homology/Alignments : Family Browser (UCSC)CHST4
Phylogenetic Trees/Animal Genes : TreeFamCHST4
Chemical/Protein Interactions : CTD10164
Chemical/Pharm GKB GenePA26504
Clinical trialCHST4
Cancer Resource (Charite)ENSG00000140835
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
CoreMineCHST4
iHOPCHST4
OncoSearchCHST4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:27:38 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.