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CHST5 (carbohydrate sulfotransferase 5)

Identity

Alias_namescarbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5
Alias_symbol (synonym)I-GLCNAC-6-ST
FLJ22167
Other aliasI-GlcNAc-6-ST
I-GlcNAc6ST
glcNAc6ST-3
gn6st-3
hIGn6ST
HGNC (Hugo) CHST5
LocusID (NCBI) 23563
Atlas_Id 61823
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 75528530 and ends at 75535170 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABHD14B (3p21.2) / CHST5 (16q23.1)CHST5 (16q23.1) / TMEM231 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST5   1973
Cards
Entrez_Gene (NCBI)CHST5  23563  carbohydrate sulfotransferase 5
AliasesI-GlcNAc-6-ST; I-GlcNAc6ST; glcNAc6ST-3; gn6st-3; 
hIGn6ST
GeneCards (Weizmann)CHST5
Ensembl hg19 (Hinxton)ENSG00000135702 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135702 [Gene_View]  chr16:75528530-75535170 [Contig_View]  CHST5 [Vega]
ICGC DataPortalENSG00000135702
TCGA cBioPortalCHST5
AceView (NCBI)CHST5
Genatlas (Paris)CHST5
WikiGenes23563
SOURCE (Princeton)CHST5
Genetics Home Reference (NIH)CHST5
Genomic and cartography
GoldenPath hg38 (UCSC)CHST5  -     chr16:75528530-75535170 -  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST5  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblCHST5 - 16q23.1 [CytoView hg19]  CHST5 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBICHST5 [Mapview hg19]  CHST5 [Mapview hg38]
OMIM604817   
Gene and transcription
Genbank (Entrez)AF246718 BC147002 BC147007 BX282540 HQ448069
RefSeq transcript (Entrez)NM_012126 NM_024533
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHST5
Cluster EST : UnigeneHs.745424 [ NCBI ]
CGAP (NCI)Hs.745424
Alternative Splicing GalleryENSG00000135702
Gene ExpressionCHST5 [ NCBI-GEO ]   CHST5 [ EBI - ARRAY_EXPRESS ]   CHST5 [ SEEK ]   CHST5 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23563
GTEX Portal (Tissue expression)CHST5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZS9
Splice isoforms : SwissVarQ9GZS9
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusQ9GZS9
Domains : Interpro (EBI)Carbohydrate_sulfotransferase    P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)CHST5
DMDM Disease mutations23563
Blocks (Seattle)CHST5
SuperfamilyQ9GZS9
Human Protein AtlasENSG00000135702
Peptide AtlasQ9GZS9
HPRD07059
IPIIPI00554552   IPI00644538   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZS9
IntAct (EBI)Q9GZS9
FunCoupENSG00000135702
BioGRIDCHST5
STRING (EMBL)CHST5
ZODIACCHST5
Ontologies - Pathways
QuickGOQ9GZS9
Ontology : AmiGOGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  N-acetylglucosamine 6-O-sulfotransferase activity  Golgi apparatus  carbohydrate metabolic process  N-acetylglucosamine metabolic process  protein sulfation  sulfur compound metabolic process  sulfotransferase activity  integral component of membrane  integral component of membrane  keratan sulfate biosynthetic process  keratan sulfate biosynthetic process  intrinsic component of Golgi membrane  
Ontology : EGO-EBIGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  N-acetylglucosamine 6-O-sulfotransferase activity  Golgi apparatus  carbohydrate metabolic process  N-acetylglucosamine metabolic process  protein sulfation  sulfur compound metabolic process  sulfotransferase activity  integral component of membrane  integral component of membrane  keratan sulfate biosynthetic process  keratan sulfate biosynthetic process  intrinsic component of Golgi membrane  
NDEx NetworkCHST5
Atlas of Cancer Signalling NetworkCHST5
Wikipedia pathwaysCHST5
Orthology - Evolution
OrthoDB23563
GeneTree (enSembl)ENSG00000135702
Phylogenetic Trees/Animal Genes : TreeFamCHST5
HOVERGENQ9GZS9
HOGENOMQ9GZS9
Homologs : HomoloGeneCHST5
Homology/Alignments : Family Browser (UCSC)CHST5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST5
dbVarCHST5
ClinVarCHST5
1000_GenomesCHST5 
Exome Variant ServerCHST5
ExAC (Exome Aggregation Consortium)CHST5 (select the gene name)
Genetic variants : HAPMAP23563
Genomic Variants (DGV)CHST5 [DGVbeta]
DECIPHERCHST5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST5 
Mutations
ICGC Data PortalCHST5 
TCGA Data PortalCHST5 
Broad Tumor PortalCHST5
OASIS PortalCHST5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST5
DgiDB (Drug Gene Interaction Database)CHST5
DoCM (Curated mutations)CHST5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST5 (select a term)
intoGenCHST5
Cancer3DCHST5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604817   
Orphanet
MedgenCHST5
Genetic Testing Registry CHST5
NextProtQ9GZS9 [Medical]
TSGene23563
GENETestsCHST5
Target ValidationCHST5
Huge Navigator CHST5 [HugePedia]
snp3D : Map Gene to Disease23563
BioCentury BCIQCHST5
ClinGenCHST5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23563
Chemical/Pharm GKB GenePA26505
Clinical trialCHST5
Miscellaneous
canSAR (ICR)CHST5 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST5
EVEXCHST5
GoPubMedCHST5
iHOPCHST5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:40 CEST 2017

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