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CHST6 (carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6)

Identity

Alias_namesMCDC1
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
Other alias
HGNC (Hugo) CHST6
LocusID (NCBI) 4166
Atlas_Id 61824
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 75507022 and ends at 75528926 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHST6 (16q23.1) / COTL1 (16q24.1)RBM25 (14q24.2) / CHST6 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST6   6938
Cards
Entrez_Gene (NCBI)CHST6  4166  carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
AliasesMCDC1
GeneCards (Weizmann)CHST6
Ensembl hg19 (Hinxton)ENSG00000183196 [Gene_View]  chr16:75507022-75528926 [Contig_View]  CHST6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183196 [Gene_View]  chr16:75507022-75528926 [Contig_View]  CHST6 [Vega]
ICGC DataPortalENSG00000183196
TCGA cBioPortalCHST6
AceView (NCBI)CHST6
Genatlas (Paris)CHST6
WikiGenes4166
SOURCE (Princeton)CHST6
Genetics Home Reference (NIH)CHST6
Genomic and cartography
GoldenPath hg19 (UCSC)CHST6  -     chr16:75507022-75528926 -  16q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHST6  -     16q23.1   [Description]    (hg38-Dec_2013)
EnsemblCHST6 - 16q23.1 [CytoView hg19]  CHST6 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBICHST6 [Mapview hg19]  CHST6 [Mapview hg38]
OMIM217800   605294   
Gene and transcription
Genbank (Entrez)AF280086 BC036640 BC041645 BC074834 BC074883
RefSeq transcript (Entrez)NM_021615
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_016442 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CHST6
Cluster EST : UnigeneHs.655622 [ NCBI ]
CGAP (NCI)Hs.655622
Alternative Splicing GalleryENSG00000183196
Gene ExpressionCHST6 [ NCBI-GEO ]   CHST6 [ EBI - ARRAY_EXPRESS ]   CHST6 [ SEEK ]   CHST6 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4166
GTEX Portal (Tissue expression)CHST6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZX3
Splice isoforms : SwissVarQ9GZX3
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusQ9GZX3
Domains : Interpro (EBI)Carbohydrate_sulfotransferase    P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)CHST6
DMDM Disease mutations4166
Blocks (Seattle)CHST6
SuperfamilyQ9GZX3
Human Protein AtlasENSG00000183196
Peptide AtlasQ9GZX3
HPRD05597
IPIIPI00012402   IPI00973451   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZX3
IntAct (EBI)Q9GZX3
FunCoupENSG00000183196
BioGRIDCHST6
STRING (EMBL)CHST6
ZODIACCHST6
Ontologies - Pathways
QuickGOQ9GZX3
Ontology : AmiGOGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  N-acetylglucosamine 6-O-sulfotransferase activity  Golgi apparatus  carbohydrate metabolic process  N-acetylglucosamine metabolic process  N-acetylglucosamine metabolic process  sulfur compound metabolic process  integral component of membrane  keratan sulfate biosynthetic process  keratan sulfate biosynthetic process  glycosaminoglycan metabolic process  keratan sulfate metabolic process  small molecule metabolic process  
Ontology : EGO-EBIGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  N-acetylglucosamine 6-O-sulfotransferase activity  Golgi apparatus  carbohydrate metabolic process  N-acetylglucosamine metabolic process  N-acetylglucosamine metabolic process  sulfur compound metabolic process  integral component of membrane  keratan sulfate biosynthetic process  keratan sulfate biosynthetic process  glycosaminoglycan metabolic process  keratan sulfate metabolic process  small molecule metabolic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - keratan sulfate   
NDEx NetworkCHST6
Atlas of Cancer Signalling NetworkCHST6
Wikipedia pathwaysCHST6
Orthology - Evolution
OrthoDB4166
GeneTree (enSembl)ENSG00000183196
Phylogenetic Trees/Animal Genes : TreeFamCHST6
HOVERGENQ9GZX3
HOGENOMQ9GZX3
Homologs : HomoloGeneCHST6
Homology/Alignments : Family Browser (UCSC)CHST6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST6
dbVarCHST6
ClinVarCHST6
1000_GenomesCHST6 
Exome Variant ServerCHST6
ExAC (Exome Aggregation Consortium)CHST6 (select the gene name)
Genetic variants : HAPMAP4166
Genomic Variants (DGV)CHST6 [DGVbeta]
DECIPHER (Syndromes)16:75507022-75528926  ENSG00000183196
CONAN: Copy Number AnalysisCHST6 
Mutations
ICGC Data PortalCHST6 
TCGA Data PortalCHST6 
Broad Tumor PortalCHST6
OASIS PortalCHST6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST6
DgiDB (Drug Gene Interaction Database)CHST6
DoCM (Curated mutations)CHST6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST6 (select a term)
intoGenCHST6
Cancer3DCHST6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM217800    605294   
Orphanet13986   
MedgenCHST6
Genetic Testing Registry CHST6
NextProtQ9GZX3 [Medical]
TSGene4166
GENETestsCHST6
Huge Navigator CHST6 [HugePedia]
snp3D : Map Gene to Disease4166
BioCentury BCIQCHST6
ClinGenCHST6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4166
Chemical/Pharm GKB GenePA26506
Clinical trialCHST6
Miscellaneous
canSAR (ICR)CHST6 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST6
EVEXCHST6
GoPubMedCHST6
iHOPCHST6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:29 CET 2017

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