Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CHST7 (carbohydrate sulfotransferase 7)

Identity

Alias_namescarbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7
Alias_symbol (synonym)C6ST-2
C6ST2
Other aliasGST-5
HGNC (Hugo) CHST7
LocusID (NCBI) 56548
Atlas_Id 61825
Location Xp11.3  [Link to chromosome band Xp11]
Location_base_pair Starts at 46573687 and ends at 46598496 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF674-AS1 (Xp11.23) / CHST7 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST7   13817
Cards
Entrez_Gene (NCBI)CHST7  56548  carbohydrate sulfotransferase 7
AliasesC6ST-2; GST-5
GeneCards (Weizmann)CHST7
Ensembl hg19 (Hinxton)ENSG00000147119 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147119 [Gene_View]  chrX:46573687-46598496 [Contig_View]  CHST7 [Vega]
ICGC DataPortalENSG00000147119
TCGA cBioPortalCHST7
AceView (NCBI)CHST7
Genatlas (Paris)CHST7
WikiGenes56548
SOURCE (Princeton)CHST7
Genetics Home Reference (NIH)CHST7
Genomic and cartography
GoldenPath hg38 (UCSC)CHST7  -     chrX:46573687-46598496 +  Xp11.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST7  -     Xp11.3   [Description]    (hg19-Feb_2009)
EnsemblCHST7 - Xp11.3 [CytoView hg19]  CHST7 - Xp11.3 [CytoView hg38]
Mapping of homologs : NCBICHST7 [Mapview hg19]  CHST7 [Mapview hg38]
OMIM300375   
Gene and transcription
Genbank (Entrez)AB037187 AB040711 BC023971 BC045537 BP250418
RefSeq transcript (Entrez)NM_019886
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHST7
Cluster EST : UnigeneHs.129955 [ NCBI ]
CGAP (NCI)Hs.129955
Alternative Splicing GalleryENSG00000147119
Gene ExpressionCHST7 [ NCBI-GEO ]   CHST7 [ EBI - ARRAY_EXPRESS ]   CHST7 [ SEEK ]   CHST7 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56548
GTEX Portal (Tissue expression)CHST7
Human Protein AtlasENSG00000147119-CHST7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS84
Splice isoforms : SwissVarQ9NS84
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusQ9NS84
Domains : Interpro (EBI)Carbohydrate_sulfotransferase    P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)CHST7
DMDM Disease mutations56548
Blocks (Seattle)CHST7
SuperfamilyQ9NS84
Human Protein Atlas [tissue]ENSG00000147119-CHST7 [tissue]
Peptide AtlasQ9NS84
HPRD02302
IPIIPI00008403   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS84
IntAct (EBI)Q9NS84
FunCoupENSG00000147119
BioGRIDCHST7
STRING (EMBL)CHST7
ZODIACCHST7
Ontologies - Pathways
QuickGOQ9NS84
Ontology : AmiGOGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  polysaccharide metabolic process  N-acetylglucosamine metabolic process  sulfur compound metabolic process  chondroitin 6-sulfotransferase activity  chondroitin 6-sulfotransferase activity  integral component of membrane  integral component of membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  
Ontology : EGO-EBIGolgi membrane  N-acetylglucosamine 6-O-sulfotransferase activity  polysaccharide metabolic process  N-acetylglucosamine metabolic process  sulfur compound metabolic process  chondroitin 6-sulfotransferase activity  chondroitin 6-sulfotransferase activity  integral component of membrane  integral component of membrane  chondroitin sulfate biosynthetic process  chondroitin sulfate biosynthetic process  
Pathways : KEGGGlycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate   
NDEx NetworkCHST7
Atlas of Cancer Signalling NetworkCHST7
Wikipedia pathwaysCHST7
Orthology - Evolution
OrthoDB56548
GeneTree (enSembl)ENSG00000147119
Phylogenetic Trees/Animal Genes : TreeFamCHST7
HOVERGENQ9NS84
HOGENOMQ9NS84
Homologs : HomoloGeneCHST7
Homology/Alignments : Family Browser (UCSC)CHST7
Gene fusions - Rearrangements
Tumor Fusion PortalCHST7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST7
dbVarCHST7
ClinVarCHST7
1000_GenomesCHST7 
Exome Variant ServerCHST7
ExAC (Exome Aggregation Consortium)ENSG00000147119
GNOMAD BrowserENSG00000147119
Genetic variants : HAPMAP56548
Genomic Variants (DGV)CHST7 [DGVbeta]
DECIPHERCHST7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST7 
Mutations
ICGC Data PortalCHST7 
TCGA Data PortalCHST7 
Broad Tumor PortalCHST7
OASIS PortalCHST7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST7
DgiDB (Drug Gene Interaction Database)CHST7
DoCM (Curated mutations)CHST7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST7 (select a term)
intoGenCHST7
Cancer3DCHST7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300375   
Orphanet
DisGeNETCHST7
MedgenCHST7
Genetic Testing Registry CHST7
NextProtQ9NS84 [Medical]
TSGene56548
GENETestsCHST7
Target ValidationCHST7
Huge Navigator CHST7 [HugePedia]
snp3D : Map Gene to Disease56548
BioCentury BCIQCHST7
ClinGenCHST7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56548
Chemical/Pharm GKB GenePA26507
Clinical trialCHST7
Miscellaneous
canSAR (ICR)CHST7 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST7
EVEXCHST7
GoPubMedCHST7
iHOPCHST7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:59:19 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.