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CHST8 (carbohydrate sulfotransferase 8)

Identity

Alias_namescarbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
Alias_symbol (synonym)GALNAC-4-ST1
Other aliasGALNAC4ST1
GalNAc4ST
PSS3
HGNC (Hugo) CHST8
LocusID (NCBI) 64377
Atlas_Id 61826
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 33621955 and ends at 33773509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHST8 (19q13.11) / KCNJ15 (21q22.13)CHST8 (19q13.11) / PDCD5 (19q13.11)CHST8 KCNJ15
CHST8 PDCD5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST8   15993
Cards
Entrez_Gene (NCBI)CHST8  64377  carbohydrate sulfotransferase 8
AliasesGALNAC4ST1; GalNAc4ST; PSS3
GeneCards (Weizmann)CHST8
Ensembl hg19 (Hinxton)ENSG00000124302 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124302 [Gene_View]  chr19:33621955-33773509 [Contig_View]  CHST8 [Vega]
ICGC DataPortalENSG00000124302
TCGA cBioPortalCHST8
AceView (NCBI)CHST8
Genatlas (Paris)CHST8
WikiGenes64377
SOURCE (Princeton)CHST8
Genetics Home Reference (NIH)CHST8
Genomic and cartography
GoldenPath hg38 (UCSC)CHST8  -     chr19:33621955-33773509 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST8  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblCHST8 - 19q13.11 [CytoView hg19]  CHST8 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBICHST8 [Mapview hg19]  CHST8 [Mapview hg38]
OMIM610190   616265   
Gene and transcription
Genbank (Entrez)AB047801 AF300612 AF305781 BC011380 BC014250
RefSeq transcript (Entrez)NM_001127895 NM_001127896 NM_022467
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHST8
Cluster EST : UnigeneHs.165724 [ NCBI ]
CGAP (NCI)Hs.165724
Alternative Splicing GalleryENSG00000124302
Gene ExpressionCHST8 [ NCBI-GEO ]   CHST8 [ EBI - ARRAY_EXPRESS ]   CHST8 [ SEEK ]   CHST8 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64377
GTEX Portal (Tissue expression)CHST8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2A9
Splice isoforms : SwissVarQ9H2A9
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusQ9H2A9
Domains : Interpro (EBI)Carb_sulfotrans_8-10    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)CHST8
DMDM Disease mutations64377
Blocks (Seattle)CHST8
SuperfamilyQ9H2A9
Human Protein AtlasENSG00000124302
Peptide AtlasQ9H2A9
HPRD07632
IPIIPI00300838   IPI00980566   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2A9
IntAct (EBI)Q9H2A9
FunCoupENSG00000124302
BioGRIDCHST8
STRING (EMBL)CHST8
ZODIACCHST8
Ontologies - Pathways
QuickGOQ9H2A9
Ontology : AmiGOGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  N-acetylgalactosamine 4-O-sulfotransferase activity  sulfur compound metabolic process  central nervous system development  integral component of membrane  carbohydrate biosynthetic process  proteoglycan biosynthetic process  hormone biosynthetic process  
Ontology : EGO-EBIGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  N-acetylgalactosamine 4-O-sulfotransferase activity  sulfur compound metabolic process  central nervous system development  integral component of membrane  carbohydrate biosynthetic process  proteoglycan biosynthetic process  hormone biosynthetic process  
NDEx NetworkCHST8
Atlas of Cancer Signalling NetworkCHST8
Wikipedia pathwaysCHST8
Orthology - Evolution
OrthoDB64377
GeneTree (enSembl)ENSG00000124302
Phylogenetic Trees/Animal Genes : TreeFamCHST8
HOVERGENQ9H2A9
HOGENOMQ9H2A9
Homologs : HomoloGeneCHST8
Homology/Alignments : Family Browser (UCSC)CHST8
Gene fusions - Rearrangements
Fusion: TCGACHST8 KCNJ15
Fusion: TCGACHST8 PDCD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST8
dbVarCHST8
ClinVarCHST8
1000_GenomesCHST8 
Exome Variant ServerCHST8
ExAC (Exome Aggregation Consortium)CHST8 (select the gene name)
Genetic variants : HAPMAP64377
Genomic Variants (DGV)CHST8 [DGVbeta]
DECIPHERCHST8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST8 
Mutations
ICGC Data PortalCHST8 
TCGA Data PortalCHST8 
Broad Tumor PortalCHST8
OASIS PortalCHST8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST8
DgiDB (Drug Gene Interaction Database)CHST8
DoCM (Curated mutations)CHST8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST8 (select a term)
intoGenCHST8
Cancer3DCHST8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610190    616265   
Orphanet20070   
MedgenCHST8
Genetic Testing Registry CHST8
NextProtQ9H2A9 [Medical]
TSGene64377
GENETestsCHST8
Target ValidationCHST8
Huge Navigator CHST8 [HugePedia]
snp3D : Map Gene to Disease64377
BioCentury BCIQCHST8
ClinGenCHST8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64377
Chemical/Pharm GKB GenePA26508
Clinical trialCHST8
Miscellaneous
canSAR (ICR)CHST8 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST8
EVEXCHST8
GoPubMedCHST8
iHOPCHST8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:40 CEST 2017

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