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CHST8 (carbohydrate sulfotransferase 8)

Identity

Alias (NCBI)GALNAC4ST1
GalNAc4ST
PSS3
HGNC (Hugo) CHST8
HGNC Alias symbGALNAC-4-ST1
HGNC Previous namecarbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
LocusID (NCBI) 64377
Atlas_Id 61826
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 33684528 and ends at 33773509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHST8 (19q13.11) / KCNJ15 (21q22.13)CHST8 (19q13.11) / PDCD5 (19q13.11)CHST8 KCNJ15
CHST8 PDCD5

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CHST8   15993
Cards
Entrez_Gene (NCBI)CHST8    carbohydrate sulfotransferase 8
AliasesGALNAC4ST1; GalNAc4ST; PSS3
GeneCards (Weizmann)CHST8
Ensembl hg19 (Hinxton)ENSG00000124302 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124302 [Gene_View]  ENSG00000124302 [Sequence]  chr19:33684528-33773509 [Contig_View]  CHST8 [Vega]
ICGC DataPortalENSG00000124302
TCGA cBioPortalCHST8
AceView (NCBI)CHST8
Genatlas (Paris)CHST8
SOURCE (Princeton)CHST8
Genetics Home Reference (NIH)CHST8
Genomic and cartography
GoldenPath hg38 (UCSC)CHST8  -     chr19:33684528-33773509 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST8  -     19q13.11   [Description]    (hg19-Feb_2009)
GoldenPathCHST8 - 19q13.11 [CytoView hg19]  CHST8 - 19q13.11 [CytoView hg38]
ImmunoBaseENSG00000124302
Genome Data Viewer NCBICHST8 [Mapview hg19]  
OMIM610190   616265   
Gene and transcription
Genbank (Entrez)AB047801 AF300612 AF305781 BC011380 BC014250
RefSeq transcript (Entrez)NM_001127895 NM_001127896 NM_022467
Consensus coding sequences : CCDS (NCBI)CHST8
Gene ExpressionCHST8 [ NCBI-GEO ]   CHST8 [ EBI - ARRAY_EXPRESS ]   CHST8 [ SEEK ]   CHST8 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST8 [ Firebrowse - Broad ]
GenevisibleExpression of CHST8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64377
GTEX Portal (Tissue expression)CHST8
Human Protein AtlasENSG00000124302-CHST8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2A9
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9H2A9
Domains : Interpro (EBI)Carb_sulfotrans_8-10    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)CHST8
SuperfamilyQ9H2A9
AlphaFold pdb e-kbQ9H2A9   
Human Protein Atlas [tissue]ENSG00000124302-CHST8 [tissue]
HPRD07632
Protein Interaction databases
DIP (DOE-UCLA)Q9H2A9
IntAct (EBI)Q9H2A9
BioGRIDCHST8
STRING (EMBL)CHST8
ZODIACCHST8
Ontologies - Pathways
QuickGOQ9H2A9
Ontology : AmiGOGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  protein binding  sulfur compound metabolic process  central nervous system development  sulfotransferase activity  integral component of membrane  carbohydrate biosynthetic process  proteoglycan biosynthetic process  proteoglycan biosynthetic process  hormone biosynthetic process  
Ontology : EGO-EBIGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  protein binding  sulfur compound metabolic process  central nervous system development  sulfotransferase activity  integral component of membrane  carbohydrate biosynthetic process  proteoglycan biosynthetic process  proteoglycan biosynthetic process  hormone biosynthetic process  
Pathways : KEGGCysteine metabolism   
NDEx NetworkCHST8
Atlas of Cancer Signalling NetworkCHST8
Wikipedia pathwaysCHST8
Orthology - Evolution
OrthoDB64377
GeneTree (enSembl)ENSG00000124302
Phylogenetic Trees/Animal Genes : TreeFamCHST8
Homologs : HomoloGeneCHST8
Homology/Alignments : Family Browser (UCSC)CHST8
Gene fusions - Rearrangements
Fusion : QuiverCHST8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST8
dbVarCHST8
ClinVarCHST8
MonarchCHST8
1000_GenomesCHST8 
Exome Variant ServerCHST8
GNOMAD BrowserENSG00000124302
Varsome BrowserCHST8
ACMGCHST8 variants
VarityQ9H2A9
Genomic Variants (DGV)CHST8 [DGVbeta]
DECIPHERCHST8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST8 
Mutations
ICGC Data PortalCHST8 
TCGA Data PortalCHST8 
Broad Tumor PortalCHST8
OASIS PortalCHST8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCHST8
Mutations and Diseases : HGMDCHST8
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCHST8
DgiDB (Drug Gene Interaction Database)CHST8
DoCM (Curated mutations)CHST8
CIViC (Clinical Interpretations of Variants in Cancer)CHST8
Cancer3DCHST8
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610190    616265   
Orphanet20070   
DisGeNETCHST8
MedgenCHST8
Genetic Testing Registry CHST8
NextProtQ9H2A9 [Medical]
GENETestsCHST8
Target ValidationCHST8
Huge Navigator CHST8 [HugePedia]
ClinGenCHST8
Clinical trials, drugs, therapy
MyCancerGenomeCHST8
Protein Interactions : CTDCHST8
Pharm GKB GenePA26508
PharosQ9H2A9
Clinical trialCHST8
Miscellaneous
canSAR (ICR)CHST8
HarmonizomeCHST8
DataMed IndexCHST8
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCHST8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:46:06 CEST 2021

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