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CHST9 (carbohydrate sulfotransferase 9)

Identity

Alias_namescarbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
Alias_symbol (synonym)GALNAC4ST-2
GALNAC-4-ST2
Other aliasGalNAc4ST2
HGNC (Hugo) CHST9
LocusID (NCBI) 83539
Atlas_Id 56223
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 26915631 and ends at 27185338 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHST9 (18q11.2) / ZNF675 (19p12)NDUFV2 (18p11.22) / CHST9 (18q11.2)TAF4B (18q11.2) / CHST9 (18q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHST9   19898
Cards
Entrez_Gene (NCBI)CHST9  83539  carbohydrate sulfotransferase 9
AliasesGALNAC4ST-2; GalNAc4ST2
GeneCards (Weizmann)CHST9
Ensembl hg19 (Hinxton)ENSG00000154080 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154080 [Gene_View]  chr18:26915631-27185338 [Contig_View]  CHST9 [Vega]
ICGC DataPortalENSG00000154080
TCGA cBioPortalCHST9
AceView (NCBI)CHST9
Genatlas (Paris)CHST9
WikiGenes83539
SOURCE (Princeton)CHST9
Genetics Home Reference (NIH)CHST9
Genomic and cartography
GoldenPath hg38 (UCSC)CHST9  -     chr18:26915631-27185338 -  18q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHST9  -     18q11.2   [Description]    (hg19-Feb_2009)
EnsemblCHST9 - 18q11.2 [CytoView hg19]  CHST9 - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBICHST9 [Mapview hg19]  CHST9 [Mapview hg38]
OMIM610191   
Gene and transcription
Genbank (Entrez)AF239821 AF332472 AF332473 AJ707539 AK093349
RefSeq transcript (Entrez)NM_001243848 NM_001256316 NM_031422
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHST9
Cluster EST : UnigeneHs.706552 [ NCBI ]
CGAP (NCI)Hs.706552
Alternative Splicing GalleryENSG00000154080
Gene ExpressionCHST9 [ NCBI-GEO ]   CHST9 [ EBI - ARRAY_EXPRESS ]   CHST9 [ SEEK ]   CHST9 [ MEM ]
Gene Expression Viewer (FireBrowse)CHST9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83539
GTEX Portal (Tissue expression)CHST9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L1S5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L1S5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L1S5
Splice isoforms : SwissVarQ7L1S5
Catalytic activity : Enzyme2.8.2.- [ Enzyme-Expasy ]   2.8.2.-2.8.2.- [ IntEnz-EBI ]   2.8.2.- [ BRENDA ]   2.8.2.- [ KEGG ]   
PhosPhoSitePlusQ7L1S5
Domains : Interpro (EBI)Carb_sulfotrans_8-10    Sulfotransferase   
Domain families : Pfam (Sanger)Sulfotransfer_2 (PF03567)   
Domain families : Pfam (NCBI)pfam03567   
Conserved Domain (NCBI)CHST9
DMDM Disease mutations83539
Blocks (Seattle)CHST9
SuperfamilyQ7L1S5
Human Protein AtlasENSG00000154080
Peptide AtlasQ7L1S5
IPIIPI00000111   IPI00554505   
Protein Interaction databases
DIP (DOE-UCLA)Q7L1S5
IntAct (EBI)Q7L1S5
FunCoupENSG00000154080
BioGRIDCHST9
STRING (EMBL)CHST9
ZODIACCHST9
Ontologies - Pathways
QuickGOQ7L1S5
Ontology : AmiGOGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  N-acetylgalactosamine 4-O-sulfotransferase activity  extracellular region  sulfur compound metabolic process  integral component of membrane  carbohydrate biosynthetic process  proteoglycan biosynthetic process  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  hormone biosynthetic process  chondroitin 4-sulfotransferase activity  
Ontology : EGO-EBIGolgi membrane  N-acetylgalactosamine 4-O-sulfotransferase activity  N-acetylgalactosamine 4-O-sulfotransferase activity  extracellular region  sulfur compound metabolic process  integral component of membrane  carbohydrate biosynthetic process  proteoglycan biosynthetic process  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  hormone biosynthetic process  chondroitin 4-sulfotransferase activity  
NDEx NetworkCHST9
Atlas of Cancer Signalling NetworkCHST9
Wikipedia pathwaysCHST9
Orthology - Evolution
OrthoDB83539
GeneTree (enSembl)ENSG00000154080
Phylogenetic Trees/Animal Genes : TreeFamCHST9
HOVERGENQ7L1S5
HOGENOMQ7L1S5
Homologs : HomoloGeneCHST9
Homology/Alignments : Family Browser (UCSC)CHST9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHST9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHST9
dbVarCHST9
ClinVarCHST9
1000_GenomesCHST9 
Exome Variant ServerCHST9
ExAC (Exome Aggregation Consortium)CHST9 (select the gene name)
Genetic variants : HAPMAP83539
Genomic Variants (DGV)CHST9 [DGVbeta]
DECIPHERCHST9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHST9 
Mutations
ICGC Data PortalCHST9 
TCGA Data PortalCHST9 
Broad Tumor PortalCHST9
OASIS PortalCHST9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHST9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHST9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CHST9
DgiDB (Drug Gene Interaction Database)CHST9
DoCM (Curated mutations)CHST9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHST9 (select a term)
intoGenCHST9
Cancer3DCHST9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610191   
Orphanet
MedgenCHST9
Genetic Testing Registry CHST9
NextProtQ7L1S5 [Medical]
TSGene83539
GENETestsCHST9
Target ValidationCHST9
Huge Navigator CHST9 [HugePedia]
snp3D : Map Gene to Disease83539
BioCentury BCIQCHST9
ClinGenCHST9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83539
Chemical/Pharm GKB GenePA134888782
Clinical trialCHST9
Miscellaneous
canSAR (ICR)CHST9 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHST9
EVEXCHST9
GoPubMedCHST9
iHOPCHST9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:26 CEST 2017

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