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CHTF18 (chromosome transmission fidelity factor 18)

Identity

Alias_namesC16orf41
chromosome 16 open reading frame 41
CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)
Alias_symbol (synonym)CHL12
C321D2.4
Ctf18
Other aliasC321D2.2
C321D2.3
RUVBL
HGNC (Hugo) CHTF18
LocusID (NCBI) 63922
Atlas_Id 46708
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 788622 and ends at 798074 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSC2 (16p13.3) / CHTF18 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHTF18   18435
Cards
Entrez_Gene (NCBI)CHTF18  63922  chromosome transmission fidelity factor 18
AliasesC16orf41; C321D2.2; C321D2.3; C321D2.4; 
CHL12; Ctf18; RUVBL
GeneCards (Weizmann)CHTF18
Ensembl hg19 (Hinxton)ENSG00000127586 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127586 [Gene_View]  chr16:788622-798074 [Contig_View]  CHTF18 [Vega]
ICGC DataPortalENSG00000127586
TCGA cBioPortalCHTF18
AceView (NCBI)CHTF18
Genatlas (Paris)CHTF18
WikiGenes63922
SOURCE (Princeton)CHTF18
Genetics Home Reference (NIH)CHTF18
Genomic and cartography
GoldenPath hg38 (UCSC)CHTF18  -     chr16:788622-798074 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHTF18  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblCHTF18 - 16p13.3 [CytoView hg19]  CHTF18 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICHTF18 [Mapview hg19]  CHTF18 [Mapview hg38]
OMIM613201   
Gene and transcription
Genbank (Entrez)AI650845 AK024476 AK128869 AK293846 AK309804
RefSeq transcript (Entrez)NM_022092
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHTF18
Cluster EST : UnigeneHs.153850 [ NCBI ]
CGAP (NCI)Hs.153850
Alternative Splicing GalleryENSG00000127586
Gene ExpressionCHTF18 [ NCBI-GEO ]   CHTF18 [ EBI - ARRAY_EXPRESS ]   CHTF18 [ SEEK ]   CHTF18 [ MEM ]
Gene Expression Viewer (FireBrowse)CHTF18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63922
GTEX Portal (Tissue expression)CHTF18
Human Protein AtlasENSG00000127586-CHTF18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVB6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVB6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVB6
Splice isoforms : SwissVarQ8WVB6
PhosPhoSitePlusQ8WVB6
Domains : Interpro (EBI)AAA+_ATPase    ATPase_AAA_core    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA (PF00004)   
Domain families : Pfam (NCBI)pfam00004   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)CHTF18
DMDM Disease mutations63922
Blocks (Seattle)CHTF18
SuperfamilyQ8WVB6
Human Protein Atlas [tissue]ENSG00000127586-CHTF18 [tissue]
Peptide AtlasQ8WVB6
HPRD13059
IPIIPI00872454   IPI00414657   IPI00895945   IPI00178203   IPI00927525   IPI00922118   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVB6
IntAct (EBI)Q8WVB6
FunCoupENSG00000127586
BioGRIDCHTF18
STRING (EMBL)CHTF18
ZODIACCHTF18
Ontologies - Pathways
QuickGOQ8WVB6
Ontology : AmiGODNA clamp loader activity  protein binding  ATP binding  nucleoplasm  cytosol  DNA replication  cell cycle  membrane  Ctf18 RFC-like complex  single-stranded DNA-dependent ATPase activity  positive regulation of DNA-directed DNA polymerase activity  
Ontology : EGO-EBIDNA clamp loader activity  protein binding  ATP binding  nucleoplasm  cytosol  DNA replication  cell cycle  membrane  Ctf18 RFC-like complex  single-stranded DNA-dependent ATPase activity  positive regulation of DNA-directed DNA polymerase activity  
NDEx NetworkCHTF18
Atlas of Cancer Signalling NetworkCHTF18
Wikipedia pathwaysCHTF18
Orthology - Evolution
OrthoDB63922
GeneTree (enSembl)ENSG00000127586
Phylogenetic Trees/Animal Genes : TreeFamCHTF18
HOVERGENQ8WVB6
HOGENOMQ8WVB6
Homologs : HomoloGeneCHTF18
Homology/Alignments : Family Browser (UCSC)CHTF18
Gene fusions - Rearrangements
Tumor Fusion PortalCHTF18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHTF18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHTF18
dbVarCHTF18
ClinVarCHTF18
1000_GenomesCHTF18 
Exome Variant ServerCHTF18
ExAC (Exome Aggregation Consortium)ENSG00000127586
GNOMAD BrowserENSG00000127586
Genetic variants : HAPMAP63922
Genomic Variants (DGV)CHTF18 [DGVbeta]
DECIPHERCHTF18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHTF18 
Mutations
ICGC Data PortalCHTF18 
TCGA Data PortalCHTF18 
Broad Tumor PortalCHTF18
OASIS PortalCHTF18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHTF18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHTF18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHTF18
DgiDB (Drug Gene Interaction Database)CHTF18
DoCM (Curated mutations)CHTF18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHTF18 (select a term)
intoGenCHTF18
Cancer3DCHTF18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613201   
Orphanet
DisGeNETCHTF18
MedgenCHTF18
Genetic Testing Registry CHTF18
NextProtQ8WVB6 [Medical]
TSGene63922
GENETestsCHTF18
Target ValidationCHTF18
Huge Navigator CHTF18 [HugePedia]
snp3D : Map Gene to Disease63922
BioCentury BCIQCHTF18
ClinGenCHTF18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63922
Chemical/Pharm GKB GenePA134908713
Clinical trialCHTF18
Miscellaneous
canSAR (ICR)CHTF18 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHTF18
EVEXCHTF18
GoPubMedCHTF18
iHOPCHTF18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:07:50 CET 2017

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