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CHTF8 (chromosome transmission fidelity factor 8)

Identity

Alias_namesCTF8
Alias_symbol (synonym)FLJ20400
CTF8
DERPC
Other alias
HGNC (Hugo) CHTF8
LocusID (NCBI) 54921
Atlas_Id 50694
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 69151912 and ends at 69166493 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KIF2C (1p34.1) / CHTF8 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHTF8   24353
Cards
Entrez_Gene (NCBI)CHTF8  54921  chromosome transmission fidelity factor 8
AliasesCTF8; DERPC
GeneCards (Weizmann)CHTF8
Ensembl hg19 (Hinxton)ENSG00000168802 [Gene_View]  chr16:69151912-69166493 [Contig_View]  CHTF8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168802 [Gene_View]  chr16:69151912-69166493 [Contig_View]  CHTF8 [Vega]
ICGC DataPortalENSG00000168802
TCGA cBioPortalCHTF8
AceView (NCBI)CHTF8
Genatlas (Paris)CHTF8
WikiGenes54921
SOURCE (Princeton)CHTF8
Genetics Home Reference (NIH)CHTF8
Genomic and cartography
GoldenPath hg19 (UCSC)CHTF8  -     chr16:69151912-69166493 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHTF8  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblCHTF8 - 16q22.1 [CytoView hg19]  CHTF8 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBICHTF8 [Mapview hg19]  CHTF8 [Mapview hg38]
OMIM613202   
Gene and transcription
Genbank (Entrez)AF525164 AK000407 AL833902 BC018700 BC069059
RefSeq transcript (Entrez)NM_001002847 NM_001039690 NM_001040144 NM_001040145 NM_001040146 NM_017804
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CHTF8
Cluster EST : UnigeneHs.85962 [ NCBI ]
CGAP (NCI)Hs.85962
Alternative Splicing GalleryENSG00000168802
Gene ExpressionCHTF8 [ NCBI-GEO ]   CHTF8 [ EBI - ARRAY_EXPRESS ]   CHTF8 [ SEEK ]   CHTF8 [ MEM ]
Gene Expression Viewer (FireBrowse)CHTF8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54921
GTEX Portal (Tissue expression)CHTF8
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG13
Splice isoforms : SwissVarP0CG13
PhosPhoSitePlusP0CG13
Domains : Interpro (EBI)Chromosome_trans_fidel_Ctf8   
Domain families : Pfam (Sanger)Ctf8 (PF09696)   
Domain families : Pfam (NCBI)pfam09696   
Conserved Domain (NCBI)CHTF8
DMDM Disease mutations54921
Blocks (Seattle)CHTF8
SuperfamilyP0CG13
Human Protein AtlasENSG00000168802
Peptide AtlasP0CG13
HPRD16797
IPIIPI00171540   IPI00736473   IPI00974371   IPI00974424   IPI00977411   IPI00974207   IPI00976840   
Protein Interaction databases
DIP (DOE-UCLA)P0CG13
IntAct (EBI)P0CG13
FunCoupENSG00000168802
BioGRIDCHTF8
STRING (EMBL)CHTF8
ZODIACCHTF8
Ontologies - Pathways
QuickGOP0CG13
Ontology : AmiGODNA clamp loader activity  nucleus  DNA replication  cell cycle  Ctf18 RFC-like complex  single-stranded DNA-dependent ATPase activity  extracellular exosome  positive regulation of DNA-directed DNA polymerase activity  
Ontology : EGO-EBIDNA clamp loader activity  nucleus  DNA replication  cell cycle  Ctf18 RFC-like complex  single-stranded DNA-dependent ATPase activity  extracellular exosome  positive regulation of DNA-directed DNA polymerase activity  
NDEx NetworkCHTF8
Atlas of Cancer Signalling NetworkCHTF8
Wikipedia pathwaysCHTF8
Orthology - Evolution
OrthoDB54921
GeneTree (enSembl)ENSG00000168802
Phylogenetic Trees/Animal Genes : TreeFamCHTF8
HOVERGENP0CG13
HOGENOMP0CG13
Homologs : HomoloGeneCHTF8
Homology/Alignments : Family Browser (UCSC)CHTF8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHTF8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHTF8
dbVarCHTF8
ClinVarCHTF8
1000_GenomesCHTF8 
Exome Variant ServerCHTF8
ExAC (Exome Aggregation Consortium)CHTF8 (select the gene name)
Genetic variants : HAPMAP54921
Genomic Variants (DGV)CHTF8 [DGVbeta]
DECIPHER (Syndromes)16:69151912-69166493  ENSG00000168802
CONAN: Copy Number AnalysisCHTF8 
Mutations
ICGC Data PortalCHTF8 
TCGA Data PortalCHTF8 
Broad Tumor PortalCHTF8
OASIS PortalCHTF8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCHTF8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHTF8
DgiDB (Drug Gene Interaction Database)CHTF8
DoCM (Curated mutations)CHTF8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHTF8 (select a term)
intoGenCHTF8
Cancer3DCHTF8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613202   
Orphanet
MedgenCHTF8
Genetic Testing Registry CHTF8
NextProtP0CG13 [Medical]
TSGene54921
GENETestsCHTF8
Huge Navigator CHTF8 [HugePedia]
snp3D : Map Gene to Disease54921
BioCentury BCIQCHTF8
ClinGenCHTF8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54921
Chemical/Pharm GKB GenePA164717934
Clinical trialCHTF8
Miscellaneous
canSAR (ICR)CHTF8 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHTF8
EVEXCHTF8
GoPubMedCHTF8
iHOPCHTF8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 30 14:56:37 CEST 2017

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