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CHTOP (chromatin target of PRMT1)

Identity

Alias_namesC1orf77
chromosome 1 open reading frame 77
Alias_symbol (synonym)DKFZP547E1010
SRAG
FOP
Other aliasFL-SRAG
SRAG-3
SRAG-5
pp7704
HGNC (Hugo) CHTOP
LocusID (NCBI) 26097
Atlas_Id 55309
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 153606458 and ends at 153618782 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHTOP (1q21.3) / CHTOP (1q21.3)CHTOP (1q21.3) / GRIK1 (21q21.3)CHTOP (1q21.3) / RAB13 (1q21.3)
CHTOP (1q21.3) / S100A13 (1q21.3)FGFR1 (8p11.23) / CHTOP (1q21.3)INTS3 (1q21.3) / CHTOP (1q21.3)
OTUD5 (Xp11.23) / CHTOP (1q21.3)INTS3 1q21.3 / CHTOP 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHTOP   24511
Cards
Entrez_Gene (NCBI)CHTOP  26097  chromatin target of PRMT1
AliasesC1orf77; FL-SRAG; FOP; SRAG; 
SRAG-3; SRAG-5; pp7704
GeneCards (Weizmann)CHTOP
Ensembl hg19 (Hinxton)ENSG00000160679 [Gene_View]  chr1:153606458-153618782 [Contig_View]  CHTOP [Vega]
Ensembl hg38 (Hinxton)ENSG00000160679 [Gene_View]  chr1:153606458-153618782 [Contig_View]  CHTOP [Vega]
ICGC DataPortalENSG00000160679
TCGA cBioPortalCHTOP
AceView (NCBI)CHTOP
Genatlas (Paris)CHTOP
WikiGenes26097
SOURCE (Princeton)CHTOP
Genetics Home Reference (NIH)CHTOP
Genomic and cartography
GoldenPath hg19 (UCSC)CHTOP  -     chr1:153606458-153618782 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CHTOP  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblCHTOP - 1q21.3 [CytoView hg19]  CHTOP - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBICHTOP [Mapview hg19]  CHTOP [Mapview hg38]
OMIM614206   
Gene and transcription
Genbank (Entrez)AF261137 AF318362 AI929184 AK095230 AK097870
RefSeq transcript (Entrez)NM_001206612 NM_001244664 NM_001317077 NM_015607
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_030030 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)CHTOP
Cluster EST : UnigeneHs.611057 [ NCBI ]
CGAP (NCI)Hs.611057
Alternative Splicing GalleryENSG00000160679
Gene ExpressionCHTOP [ NCBI-GEO ]   CHTOP [ EBI - ARRAY_EXPRESS ]   CHTOP [ SEEK ]   CHTOP [ MEM ]
Gene Expression Viewer (FireBrowse)CHTOP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26097
GTEX Portal (Tissue expression)CHTOP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3Y2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3Y2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3Y2
Splice isoforms : SwissVarQ9Y3Y2
PhosPhoSitePlusQ9Y3Y2
Domains : Interpro (EBI)FoP_duplication   
Domain families : Pfam (Sanger)FoP_duplication (PF13865)   
Domain families : Pfam (NCBI)pfam13865   
Conserved Domain (NCBI)CHTOP
DMDM Disease mutations26097
Blocks (Seattle)CHTOP
SuperfamilyQ9Y3Y2
Human Protein AtlasENSG00000160679
Peptide AtlasQ9Y3Y2
HPRD13163
IPIIPI00300990   IPI00719040   IPI00644245   IPI00470438   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3Y2
IntAct (EBI)Q9Y3Y2
FunCoupENSG00000160679
BioGRIDCHTOP
STRING (EMBL)CHTOP
ZODIACCHTOP
Ontologies - Pathways
QuickGOQ9Y3Y2
Ontology : AmiGOtranscription export complex  protein binding  nucleoplasm  nucleoplasm  nucleolus  regulation of transcription, DNA-templated  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  mRNA export from nucleus  positive regulation of cell proliferation  methyl-CpG binding  nuclear speck  positive regulation of histone methylation  mRNA 3'-end processing  positive regulation of ATPase activity  intracellular membrane-bounded organelle  poly(A) RNA binding  positive regulation of helicase activity  
Ontology : EGO-EBItranscription export complex  protein binding  nucleoplasm  nucleoplasm  nucleolus  regulation of transcription, DNA-templated  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  mRNA export from nucleus  positive regulation of cell proliferation  methyl-CpG binding  nuclear speck  positive regulation of histone methylation  mRNA 3'-end processing  positive regulation of ATPase activity  intracellular membrane-bounded organelle  poly(A) RNA binding  positive regulation of helicase activity  
NDEx NetworkCHTOP
Atlas of Cancer Signalling NetworkCHTOP
Wikipedia pathwaysCHTOP
Orthology - Evolution
OrthoDB26097
GeneTree (enSembl)ENSG00000160679
Phylogenetic Trees/Animal Genes : TreeFamCHTOP
HOVERGENQ9Y3Y2
HOGENOMQ9Y3Y2
Homologs : HomoloGeneCHTOP
Homology/Alignments : Family Browser (UCSC)CHTOP
Gene fusions - Rearrangements
Fusion : MitelmanINTS3/CHTOP [1q21.3/1q21.3]  [t(1;1)(q21;q21)]  
Fusion: TCGAINTS3 1q21.3 CHTOP 1q21.3 THCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHTOP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHTOP
dbVarCHTOP
ClinVarCHTOP
1000_GenomesCHTOP 
Exome Variant ServerCHTOP
ExAC (Exome Aggregation Consortium)CHTOP (select the gene name)
Genetic variants : HAPMAP26097
Genomic Variants (DGV)CHTOP [DGVbeta]
DECIPHER (Syndromes)1:153606458-153618782  ENSG00000160679
CONAN: Copy Number AnalysisCHTOP 
Mutations
ICGC Data PortalCHTOP 
TCGA Data PortalCHTOP 
Broad Tumor PortalCHTOP
OASIS PortalCHTOP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHTOP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHTOP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHTOP
DgiDB (Drug Gene Interaction Database)CHTOP
DoCM (Curated mutations)CHTOP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHTOP (select a term)
intoGenCHTOP
Cancer3DCHTOP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614206   
Orphanet
MedgenCHTOP
Genetic Testing Registry CHTOP
NextProtQ9Y3Y2 [Medical]
TSGene26097
GENETestsCHTOP
Huge Navigator CHTOP [HugePedia]
snp3D : Map Gene to Disease26097
BioCentury BCIQCHTOP
ClinGenCHTOP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26097
Chemical/Pharm GKB GenePA142672526
Clinical trialCHTOP
Miscellaneous
canSAR (ICR)CHTOP (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHTOP
EVEXCHTOP
GoPubMedCHTOP
iHOPCHTOP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:00:34 CET 2017

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