Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHURC1 (churchill domain containing 1)

Identity

Alias_namesC14orf52
Alias_symbol (synonym)My015
FLJ33064
Other aliaschch
HGNC (Hugo) CHURC1
LocusID (NCBI) 91612
Atlas_Id 61829
Location 14q23.3  [Link to chromosome band 14q23]
Location_base_pair Starts at 64914361 and ends at 64935366 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHURC1 (14q23.3) / MFSD12 (19p13.3)CHURC1 (14q23.3) / PSMD3 (17q21.1)SELENBP1 (1q21.3) / CHURC1 (14q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CHURC1   20099
Cards
Entrez_Gene (NCBI)CHURC1  91612  churchill domain containing 1
AliasesC14orf52; My015; chch
GeneCards (Weizmann)CHURC1
Ensembl hg19 (Hinxton)ENSG00000258289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258289 [Gene_View]  chr14:64914361-64935366 [Contig_View]  CHURC1 [Vega]
ICGC DataPortalENSG00000258289
TCGA cBioPortalCHURC1
AceView (NCBI)CHURC1
Genatlas (Paris)CHURC1
WikiGenes91612
SOURCE (Princeton)CHURC1
Genetics Home Reference (NIH)CHURC1
Genomic and cartography
GoldenPath hg38 (UCSC)CHURC1  -     chr14:64914361-64935366 +  14q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHURC1  -     14q23.3   [Description]    (hg19-Feb_2009)
EnsemblCHURC1 - 14q23.3 [CytoView hg19]  CHURC1 - 14q23.3 [CytoView hg38]
Mapping of homologs : NCBICHURC1 [Mapview hg19]  CHURC1 [Mapview hg38]
OMIM608577   
Gene and transcription
Genbank (Entrez)AF060510 AK057626 AK296141 AK315905 AV734503
RefSeq transcript (Entrez)NM_001204063 NM_001204064 NM_145165
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHURC1
Cluster EST : UnigeneHs.731537 [ NCBI ]
CGAP (NCI)Hs.731537
Alternative Splicing GalleryENSG00000258289
Gene ExpressionCHURC1 [ NCBI-GEO ]   CHURC1 [ EBI - ARRAY_EXPRESS ]   CHURC1 [ SEEK ]   CHURC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CHURC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91612
GTEX Portal (Tissue expression)CHURC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUH1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUH1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUH1
Splice isoforms : SwissVarQ8WUH1
PhosPhoSitePlusQ8WUH1
Domains : Interpro (EBI)Transcrpt_activator_Churchill   
Domain families : Pfam (Sanger)Churchill (PF06573)   
Domain families : Pfam (NCBI)pfam06573   
Domain structure : Prodom (Prabi Lyon)Churchill (PD355092)   
Conserved Domain (NCBI)CHURC1
DMDM Disease mutations91612
Blocks (Seattle)CHURC1
PDB (SRS)2JOX   
PDB (PDBSum)2JOX   
PDB (IMB)2JOX   
PDB (RSDB)2JOX   
Structural Biology KnowledgeBase2JOX   
SCOP (Structural Classification of Proteins)2JOX   
CATH (Classification of proteins structures)2JOX   
SuperfamilyQ8WUH1
Human Protein AtlasENSG00000258289
Peptide AtlasQ8WUH1
HPRD12262
IPIIPI00102920   IPI00921827   IPI00956205   IPI01021815   IPI00797096   IPI01022181   IPI01022341   IPI00978973   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUH1
IntAct (EBI)Q8WUH1
FunCoupENSG00000258289
BioGRIDCHURC1
STRING (EMBL)CHURC1
ZODIACCHURC1
Ontologies - Pathways
QuickGOQ8WUH1
Ontology : AmiGOtranscription, DNA-templated  multicellular organism development  zinc ion binding  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBItranscription, DNA-templated  multicellular organism development  zinc ion binding  positive regulation of transcription, DNA-templated  
NDEx NetworkCHURC1
Atlas of Cancer Signalling NetworkCHURC1
Wikipedia pathwaysCHURC1
Orthology - Evolution
OrthoDB91612
GeneTree (enSembl)ENSG00000258289
Phylogenetic Trees/Animal Genes : TreeFamCHURC1
HOVERGENQ8WUH1
HOGENOMQ8WUH1
Homologs : HomoloGeneCHURC1
Homology/Alignments : Family Browser (UCSC)CHURC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCHURC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CHURC1
dbVarCHURC1
ClinVarCHURC1
1000_GenomesCHURC1 
Exome Variant ServerCHURC1
ExAC (Exome Aggregation Consortium)CHURC1 (select the gene name)
Genetic variants : HAPMAP91612
Genomic Variants (DGV)CHURC1 [DGVbeta]
DECIPHERCHURC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCHURC1 
Mutations
ICGC Data PortalCHURC1 
TCGA Data PortalCHURC1 
Broad Tumor PortalCHURC1
OASIS PortalCHURC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCHURC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCHURC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CHURC1
DgiDB (Drug Gene Interaction Database)CHURC1
DoCM (Curated mutations)CHURC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CHURC1 (select a term)
intoGenCHURC1
Cancer3DCHURC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608577   
Orphanet
MedgenCHURC1
Genetic Testing Registry CHURC1
NextProtQ8WUH1 [Medical]
TSGene91612
GENETestsCHURC1
Target ValidationCHURC1
Huge Navigator CHURC1 [HugePedia]
snp3D : Map Gene to Disease91612
BioCentury BCIQCHURC1
ClinGenCHURC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91612
Chemical/Pharm GKB GenePA134982480
Clinical trialCHURC1
Miscellaneous
canSAR (ICR)CHURC1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHURC1
EVEXCHURC1
GoPubMedCHURC1
iHOPCHURC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:49 CEST 2017

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