Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CIAO2A (family with sequence similarity 96 member A)

Identity

Alias_namesfamily with sequence similarity 96
Alias_symbol (synonym)FLJ22875
CIA2A
Other alias
HGNC (Hugo) FAM96A
LocusID (NCBI) 84191
Atlas_Id 55416
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 64072559 and ends at 64094008 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(11;15)(p15;q22) FAM96A/STIM1
t(15;15)(q22;q22) FAM96A/SNX1
t(15;15)(q22;q22) SNX1/FAM96A


External links

Nomenclature
HGNC (Hugo)FAM96A   26235
Cards
Entrez_Gene (NCBI)CIAO2A  84191  family with sequence similarity 96 member A
AliasesCIA2A
GeneCards (Weizmann)CIAO2A
Ensembl hg19 (Hinxton)ENSG00000166797 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166797 [Gene_View]  ENSG00000166797 [Sequence]  chr15:64072559-64094008 [Contig_View]  CIAO2A [Vega]
ICGC DataPortalENSG00000166797
TCGA cBioPortalCIAO2A
AceView (NCBI)CIAO2A
Genatlas (Paris)CIAO2A
WikiGenes84191
SOURCE (Princeton)CIAO2A
Genetics Home Reference (NIH)CIAO2A
Genomic and cartography
GoldenPath hg38 (UCSC)CIAO2A  -     chr15:64072559-64094008 -  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIAO2A  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblCIAO2A - 15q22.31 [CytoView hg19]  CIAO2A - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBICIAO2A [Mapview hg19]  CIAO2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA809560 AK304202 AK312171 BC008865 BM706342
RefSeq transcript (Entrez)NM_001014812 NM_001289108 NM_032231
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CIAO2A
Cluster EST : UnigeneHs.439548 [ NCBI ]
CGAP (NCI)Hs.439548
Alternative Splicing GalleryENSG00000166797
Gene ExpressionCIAO2A [ NCBI-GEO ]   CIAO2A [ EBI - ARRAY_EXPRESS ]   CIAO2A [ SEEK ]   CIAO2A [ MEM ]
Gene Expression Viewer (FireBrowse)CIAO2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84191
GTEX Portal (Tissue expression)CIAO2A
Human Protein AtlasENSG00000166797-CIAO2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5X1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5X1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5X1
Splice isoforms : SwissVarQ9H5X1
PhosPhoSitePlusQ9H5X1
Domains : Interpro (EBI)DUF59   
Domain families : Pfam (Sanger)DUF59 (PF01883)   
Domain families : Pfam (NCBI)pfam01883   
Conserved Domain (NCBI)CIAO2A
DMDM Disease mutations84191
Blocks (Seattle)CIAO2A
PDB (SRS)2M5H    3UX2    3UX3   
PDB (PDBSum)2M5H    3UX2    3UX3   
PDB (IMB)2M5H    3UX2    3UX3   
PDB (RSDB)2M5H    3UX2    3UX3   
Structural Biology KnowledgeBase2M5H    3UX2    3UX3   
SCOP (Structural Classification of Proteins)2M5H    3UX2    3UX3   
CATH (Classification of proteins structures)2M5H    3UX2    3UX3   
SuperfamilyQ9H5X1
Human Protein Atlas [tissue]ENSG00000166797-CIAO2A [tissue]
Peptide AtlasQ9H5X1
HPRD08010
IPIIPI00030985   IPI00556162   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5X1
IntAct (EBI)Q9H5X1
FunCoupENSG00000166797
BioGRIDCIAO2A
STRING (EMBL)CIAO2A
ZODIACCIAO2A
Ontologies - Pathways
QuickGOQ9H5X1
Ontology : AmiGOmolecular_function  protein binding  cellular_component  nucleus  nucleoplasm  cytosol  chromosome segregation  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  nucleus  nucleoplasm  cytosol  chromosome segregation  biological_process  metal ion binding  
NDEx NetworkCIAO2A
Atlas of Cancer Signalling NetworkCIAO2A
Wikipedia pathwaysCIAO2A
Orthology - Evolution
OrthoDB84191
GeneTree (enSembl)ENSG00000166797
Phylogenetic Trees/Animal Genes : TreeFamFAM96A
HOVERGENQ9H5X1
HOGENOMQ9H5X1
Homologs : HomoloGeneCIAO2A
Homology/Alignments : Family Browser (UCSC)CIAO2A
Gene fusions - Rearrangements
Fusion : QuiverCIAO2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIAO2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIAO2A
dbVarCIAO2A
ClinVarCIAO2A
1000_GenomesCIAO2A 
Exome Variant ServerCIAO2A
ExAC (Exome Aggregation Consortium)ENSG00000166797
GNOMAD BrowserENSG00000166797
Genetic variants : HAPMAP84191
Genomic Variants (DGV)CIAO2A [DGVbeta]
DECIPHERCIAO2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIAO2A 
Mutations
ICGC Data PortalFAM96A 
TCGA Data PortalFAM96A 
Broad Tumor PortalFAM96A
OASIS PortalFAM96A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIAO2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDFAM96A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CIAO2A
DgiDB (Drug Gene Interaction Database)CIAO2A
DoCM (Curated mutations)CIAO2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIAO2A (select a term)
intoGenCIAO2A
Cancer3DCIAO2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCIAO2A
MedgenCIAO2A
Genetic Testing Registry CIAO2A
NextProtQ9H5X1 [Medical]
TSGene84191
GENETestsCIAO2A
Target ValidationCIAO2A
Huge Navigator FAM96A [HugePedia]
snp3D : Map Gene to Disease84191
BioCentury BCIQCIAO2A
ClinGenCIAO2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84191
Chemical/Pharm GKB GenePA142671829
Clinical trialCIAO2A
Miscellaneous
canSAR (ICR)CIAO2A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIAO2A
EVEXCIAO2A
GoPubMedCIAO2A
iHOPCIAO2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:25:11 CEST 2018

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