Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CIART (circadian associated repressor of transcription)

Identity

Alias_namesC1orf51
chromosome 1 open reading frame 51
Alias_symbol (synonym)BC017397
Other aliasCHRONO
GM129
HGNC (Hugo) CIART
LocusID (NCBI) 148523
Atlas_Id 61831
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 150282533 and ends at 150287092 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CIART   25200
Cards
Entrez_Gene (NCBI)CIART  148523  circadian associated repressor of transcription
AliasesC1orf51; CHRONO; GM129
GeneCards (Weizmann)CIART
Ensembl hg19 (Hinxton)ENSG00000159208 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159208 [Gene_View]  ENSG00000159208 [Sequence]  chr1:150282533-150287092 [Contig_View]  CIART [Vega]
ICGC DataPortalENSG00000159208
TCGA cBioPortalCIART
AceView (NCBI)CIART
Genatlas (Paris)CIART
WikiGenes148523
SOURCE (Princeton)CIART
Genetics Home Reference (NIH)CIART
Genomic and cartography
GoldenPath hg38 (UCSC)CIART  -     chr1:150282533-150287092 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIART  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblCIART - 1q21.2 [CytoView hg19]  CIART - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBICIART [Mapview hg19]  CIART [Mapview hg38]
OMIM615782   
Gene and transcription
Genbank (Entrez)AK056960 AK098755 AK315397 BC017397 BC027999
RefSeq transcript (Entrez)NM_001300838 NM_001300839 NM_001300840 NM_001300841 NM_144697
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CIART
Cluster EST : UnigeneHs.54680 [ NCBI ]
CGAP (NCI)Hs.54680
Alternative Splicing GalleryENSG00000159208
Gene ExpressionCIART [ NCBI-GEO ]   CIART [ EBI - ARRAY_EXPRESS ]   CIART [ SEEK ]   CIART [ MEM ]
Gene Expression Viewer (FireBrowse)CIART [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148523
GTEX Portal (Tissue expression)CIART
Human Protein AtlasENSG00000159208-CIART [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N365   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N365  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N365
Splice isoforms : SwissVarQ8N365
PhosPhoSitePlusQ8N365
Domains : Interpro (EBI)Ciart   
Domain families : Pfam (Sanger)Ciart (PF15673)   
Domain families : Pfam (NCBI)pfam15673   
Conserved Domain (NCBI)CIART
DMDM Disease mutations148523
Blocks (Seattle)CIART
SuperfamilyQ8N365
Human Protein Atlas [tissue]ENSG00000159208-CIART [tissue]
Peptide AtlasQ8N365
HPRD14081
IPIIPI00550656   IPI00787176   IPI00645482   IPI00641416   IPI00645629   
Protein Interaction databases
DIP (DOE-UCLA)Q8N365
IntAct (EBI)Q8N365
FunCoupENSG00000159208
BioGRIDCIART
STRING (EMBL)CIART
ZODIACCIART
Ontologies - Pathways
QuickGOQ8N365
Ontology : AmiGOcore promoter sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  PML body  circadian regulation of gene expression  locomotor rhythm  negative regulation of transcription, DNA-templated  E-box binding  
Ontology : EGO-EBIcore promoter sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  PML body  circadian regulation of gene expression  locomotor rhythm  negative regulation of transcription, DNA-templated  E-box binding  
NDEx NetworkCIART
Atlas of Cancer Signalling NetworkCIART
Wikipedia pathwaysCIART
Orthology - Evolution
OrthoDB148523
GeneTree (enSembl)ENSG00000159208
Phylogenetic Trees/Animal Genes : TreeFamCIART
HOVERGENQ8N365
HOGENOMQ8N365
Homologs : HomoloGeneCIART
Homology/Alignments : Family Browser (UCSC)CIART
Gene fusions - Rearrangements
Fusion : QuiverCIART
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIART [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIART
dbVarCIART
ClinVarCIART
1000_GenomesCIART 
Exome Variant ServerCIART
ExAC (Exome Aggregation Consortium)ENSG00000159208
GNOMAD BrowserENSG00000159208
Varsome BrowserCIART
Genetic variants : HAPMAP148523
Genomic Variants (DGV)CIART [DGVbeta]
DECIPHERCIART [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIART 
Mutations
ICGC Data PortalCIART 
TCGA Data PortalCIART 
Broad Tumor PortalCIART
OASIS PortalCIART [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCIART
BioMutasearch CIART
DgiDB (Drug Gene Interaction Database)CIART
DoCM (Curated mutations)CIART (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIART (select a term)
intoGenCIART
Cancer3DCIART(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615782   
Orphanet
DisGeNETCIART
MedgenCIART
Genetic Testing Registry CIART
NextProtQ8N365 [Medical]
TSGene148523
GENETestsCIART
Target ValidationCIART
Huge Navigator CIART [HugePedia]
snp3D : Map Gene to Disease148523
BioCentury BCIQCIART
ClinGenCIART
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148523
Chemical/Pharm GKB GenePA134921053
Clinical trialCIART
Miscellaneous
canSAR (ICR)CIART (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIART
EVEXCIART
GoPubMedCIART
iHOPCIART
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:40:41 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.