Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CIB3 (calcium and integrin binding family member 3)

Identity

Alias (NCBI)KIP3
HGNC (Hugo) CIB3
HGNC Alias symbKIP3
LocusID (NCBI) 117286
Atlas_Id 47078
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16161368 and ends at 16173525 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CIB3   24580
Cards
Entrez_Gene (NCBI)CIB3    calcium and integrin binding family member 3
AliasesKIP3
GeneCards (Weizmann)CIB3
Ensembl hg19 (Hinxton)ENSG00000141977 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141977 [Gene_View]  ENSG00000141977 [Sequence]  chr19:16161368-16173525 [Contig_View]  CIB3 [Vega]
ICGC DataPortalENSG00000141977
TCGA cBioPortalCIB3
AceView (NCBI)CIB3
Genatlas (Paris)CIB3
SOURCE (Princeton)CIB3
Genetics Home Reference (NIH)CIB3
Genomic and cartography
GoldenPath hg38 (UCSC)CIB3  -     chr19:16161368-16173525 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIB3  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathCIB3 - 19p13.11 [CytoView hg19]  CIB3 - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000141977
Genome Data Viewer NCBICIB3 [Mapview hg19]  
OMIM610645   
Gene and transcription
Genbank (Entrez)AB050868 AW295492 BC069320 BC069428 BC069524
RefSeq transcript (Entrez)NM_001300922 NM_054113
Consensus coding sequences : CCDS (NCBI)CIB3
Gene ExpressionCIB3 [ NCBI-GEO ]   CIB3 [ EBI - ARRAY_EXPRESS ]   CIB3 [ SEEK ]   CIB3 [ MEM ]
Gene Expression Viewer (FireBrowse)CIB3 [ Firebrowse - Broad ]
GenevisibleExpression of CIB3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117286
GTEX Portal (Tissue expression)CIB3
Human Protein AtlasENSG00000141977-CIB3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96Q77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96Q77
PhosPhoSitePlusQ96Q77
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Conserved Domain (NCBI)CIB3
SuperfamilyQ96Q77
AlphaFold pdb e-kbQ96Q77   
Human Protein Atlas [tissue]ENSG00000141977-CIB3 [tissue]
HPRD16713
Protein Interaction databases
DIP (DOE-UCLA)Q96Q77
IntAct (EBI)Q96Q77
BioGRIDCIB3
STRING (EMBL)CIB3
ZODIACCIB3
Ontologies - Pathways
QuickGOQ96Q77
Ontology : AmiGOmagnesium ion binding  calcium ion binding  protein binding  
Ontology : EGO-EBImagnesium ion binding  calcium ion binding  protein binding  
NDEx NetworkCIB3
Atlas of Cancer Signalling NetworkCIB3
Wikipedia pathwaysCIB3
Orthology - Evolution
OrthoDB117286
GeneTree (enSembl)ENSG00000141977
Phylogenetic Trees/Animal Genes : TreeFamCIB3
Homologs : HomoloGeneCIB3
Homology/Alignments : Family Browser (UCSC)CIB3
Gene fusions - Rearrangements
Fusion : QuiverCIB3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIB3
dbVarCIB3
ClinVarCIB3
MonarchCIB3
1000_GenomesCIB3 
Exome Variant ServerCIB3
GNOMAD BrowserENSG00000141977
Varsome BrowserCIB3
ACMGCIB3 variants
VarityQ96Q77
Genomic Variants (DGV)CIB3 [DGVbeta]
DECIPHERCIB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIB3 
Mutations
ICGC Data PortalCIB3 
TCGA Data PortalCIB3 
Broad Tumor PortalCIB3
OASIS PortalCIB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIB3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCIB3
Mutations and Diseases : HGMDCIB3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCIB3
DgiDB (Drug Gene Interaction Database)CIB3
DoCM (Curated mutations)CIB3
CIViC (Clinical Interpretations of Variants in Cancer)CIB3
Cancer3DCIB3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610645   
Orphanet
DisGeNETCIB3
MedgenCIB3
Genetic Testing Registry CIB3
NextProtQ96Q77 [Medical]
GENETestsCIB3
Target ValidationCIB3
Huge Navigator CIB3 [HugePedia]
ClinGenCIB3
Clinical trials, drugs, therapy
MyCancerGenomeCIB3
Protein Interactions : CTDCIB3
Pharm GKB GenePA134867741
PharosQ96Q77
Clinical trialCIB3
Miscellaneous
canSAR (ICR)CIB3
HarmonizomeCIB3
ARCHS4CIB3
DataMed IndexCIB3
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCIB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jan 20 12:27:40 CET 2022

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