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CIB4 (calcium and integrin binding family member 4)

Identity

Other aliasKIP4
HGNC (Hugo) CIB4
LocusID (NCBI) 130106
Atlas_Id 47327
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 26804073 and ends at 26864211 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CIB4   33703
Cards
Entrez_Gene (NCBI)CIB4  130106  calcium and integrin binding family member 4
AliasesKIP4
GeneCards (Weizmann)CIB4
Ensembl hg19 (Hinxton)ENSG00000157884 [Gene_View]  chr2:26804073-26864211 [Contig_View]  CIB4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157884 [Gene_View]  chr2:26804073-26864211 [Contig_View]  CIB4 [Vega]
ICGC DataPortalENSG00000157884
TCGA cBioPortalCIB4
AceView (NCBI)CIB4
Genatlas (Paris)CIB4
WikiGenes130106
SOURCE (Princeton)CIB4
Genetics Home Reference (NIH)CIB4
Genomic and cartography
GoldenPath hg19 (UCSC)CIB4  -     chr2:26804073-26864211 -  2p23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CIB4  -     2p23.3   [Description]    (hg38-Dec_2013)
EnsemblCIB4 - 2p23.3 [CytoView hg19]  CIB4 - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBICIB4 [Mapview hg19]  CIB4 [Mapview hg38]
OMIM610646   
Gene and transcription
Genbank (Entrez)AW138422 BC127684 BC127685 BC140923
RefSeq transcript (Entrez)NM_001029881
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)CIB4
Cluster EST : UnigeneHs.591579 [ NCBI ]
CGAP (NCI)Hs.591579
Alternative Splicing GalleryENSG00000157884
Gene ExpressionCIB4 [ NCBI-GEO ]   CIB4 [ EBI - ARRAY_EXPRESS ]   CIB4 [ SEEK ]   CIB4 [ MEM ]
Gene Expression Viewer (FireBrowse)CIB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130106
GTEX Portal (Tissue expression)CIB4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0PJX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0PJX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0PJX0
Splice isoforms : SwissVarA0PJX0
PhosPhoSitePlusA0PJX0
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CIB4
DMDM Disease mutations130106
Blocks (Seattle)CIB4
SuperfamilyA0PJX0
Human Protein AtlasENSG00000157884
Peptide AtlasA0PJX0
HPRD18726
IPIIPI00046468   IPI00894073   IPI00894188   
Protein Interaction databases
DIP (DOE-UCLA)A0PJX0
IntAct (EBI)A0PJX0
FunCoupENSG00000157884
BioGRIDCIB4
STRING (EMBL)CIB4
ZODIACCIB4
Ontologies - Pathways
QuickGOA0PJX0
Ontology : AmiGOmagnesium ion binding  calcium ion binding  protein binding  
Ontology : EGO-EBImagnesium ion binding  calcium ion binding  protein binding  
NDEx NetworkCIB4
Atlas of Cancer Signalling NetworkCIB4
Wikipedia pathwaysCIB4
Orthology - Evolution
OrthoDB130106
GeneTree (enSembl)ENSG00000157884
Phylogenetic Trees/Animal Genes : TreeFamCIB4
HOVERGENA0PJX0
HOGENOMA0PJX0
Homologs : HomoloGeneCIB4
Homology/Alignments : Family Browser (UCSC)CIB4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIB4
dbVarCIB4
ClinVarCIB4
1000_GenomesCIB4 
Exome Variant ServerCIB4
ExAC (Exome Aggregation Consortium)CIB4 (select the gene name)
Genetic variants : HAPMAP130106
Genomic Variants (DGV)CIB4 [DGVbeta]
DECIPHER (Syndromes)2:26804073-26864211  ENSG00000157884
CONAN: Copy Number AnalysisCIB4 
Mutations
ICGC Data PortalCIB4 
TCGA Data PortalCIB4 
Broad Tumor PortalCIB4
OASIS PortalCIB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIB4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCIB4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CIB4
DgiDB (Drug Gene Interaction Database)CIB4
DoCM (Curated mutations)CIB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIB4 (select a term)
intoGenCIB4
Cancer3DCIB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610646   
Orphanet
MedgenCIB4
Genetic Testing Registry CIB4
NextProtA0PJX0 [Medical]
TSGene130106
GENETestsCIB4
Huge Navigator CIB4 [HugePedia]
snp3D : Map Gene to Disease130106
BioCentury BCIQCIB4
ClinGenCIB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130106
Chemical/Pharm GKB GenePA162382288
Clinical trialCIB4
Miscellaneous
canSAR (ICR)CIB4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIB4
EVEXCIB4
GoPubMedCIB4
iHOPCIB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:36 CET 2017

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