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CIDEA (cell death-inducing DFFA-like effector a)

Identity

Alias_symbol (synonym)CIDE-A
Other alias
HGNC (Hugo) CIDEA
LocusID (NCBI) 1149
Atlas_Id 40084
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 12254319 and ends at 12277595 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CIDEA   1976
Cards
Entrez_Gene (NCBI)CIDEA  1149  cell death-inducing DFFA-like effector a
AliasesCIDE-A
GeneCards (Weizmann)CIDEA
Ensembl hg19 (Hinxton)ENSG00000176194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176194 [Gene_View]  chr18:12254319-12277595 [Contig_View]  CIDEA [Vega]
ICGC DataPortalENSG00000176194
TCGA cBioPortalCIDEA
AceView (NCBI)CIDEA
Genatlas (Paris)CIDEA
WikiGenes1149
SOURCE (Princeton)CIDEA
Genetics Home Reference (NIH)CIDEA
Genomic and cartography
GoldenPath hg38 (UCSC)CIDEA  -     chr18:12254319-12277595 +  18p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIDEA  -     18p11.21   [Description]    (hg19-Feb_2009)
EnsemblCIDEA - 18p11.21 [CytoView hg19]  CIDEA - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBICIDEA [Mapview hg19]  CIDEA [Mapview hg38]
OMIM604440   
Gene and transcription
Genbank (Entrez)AA683375 AF041378 AK122762 AY364639 BC031896
RefSeq transcript (Entrez)NM_001279 NM_001318383
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CIDEA
Cluster EST : UnigeneHs.249129 [ NCBI ]
CGAP (NCI)Hs.249129
Alternative Splicing GalleryENSG00000176194
Gene ExpressionCIDEA [ NCBI-GEO ]   CIDEA [ EBI - ARRAY_EXPRESS ]   CIDEA [ SEEK ]   CIDEA [ MEM ]
Gene Expression Viewer (FireBrowse)CIDEA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1149
GTEX Portal (Tissue expression)CIDEA
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60543
Splice isoforms : SwissVarO60543
PhosPhoSitePlusO60543
Domaine pattern : Prosite (Expaxy)CIDE_N (PS51135)   
Domains : Interpro (EBI)CIDE-A    CIDE-N_dom   
Domain families : Pfam (Sanger)CIDE-N (PF02017)   
Domain families : Pfam (NCBI)pfam02017   
Domain families : Smart (EMBL)CAD (SM00266)  
Conserved Domain (NCBI)CIDEA
DMDM Disease mutations1149
Blocks (Seattle)CIDEA
PDB (SRS)2EEL   
PDB (PDBSum)2EEL   
PDB (IMB)2EEL   
PDB (RSDB)2EEL   
Structural Biology KnowledgeBase2EEL   
SCOP (Structural Classification of Proteins)2EEL   
CATH (Classification of proteins structures)2EEL   
SuperfamilyO60543
Human Protein AtlasENSG00000176194
Peptide AtlasO60543
HPRD08380
IPIIPI00030204   IPI00384386   IPI00974051   
Protein Interaction databases
DIP (DOE-UCLA)O60543
IntAct (EBI)O60543
FunCoupENSG00000176194
BioGRIDCIDEA
STRING (EMBL)CIDEA
ZODIACCIDEA
Ontologies - Pathways
QuickGOO60543
Ontology : AmiGOtemperature homeostasis  nucleus  cytoplasm  mitochondrion  mitochondrial envelope  lipid particle  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  lipid metabolic process  apoptotic process  cell death  positive regulation of sequestering of triglyceride  lipid storage  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of tumor necrosis factor production  response to stilbenoid  protein homodimerization activity  regulation of apoptotic process  negative regulation of cytokine secretion  negative regulation of lipid catabolic process  negative regulation of lipid catabolic process  negative regulation of execution phase of apoptosis  regulation of apoptotic DNA fragmentation  
Ontology : EGO-EBItemperature homeostasis  nucleus  cytoplasm  mitochondrion  mitochondrial envelope  lipid particle  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  lipid metabolic process  apoptotic process  cell death  positive regulation of sequestering of triglyceride  lipid storage  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of tumor necrosis factor production  response to stilbenoid  protein homodimerization activity  regulation of apoptotic process  negative regulation of cytokine secretion  negative regulation of lipid catabolic process  negative regulation of lipid catabolic process  negative regulation of execution phase of apoptosis  regulation of apoptotic DNA fragmentation  
NDEx NetworkCIDEA
Atlas of Cancer Signalling NetworkCIDEA
Wikipedia pathwaysCIDEA
Orthology - Evolution
OrthoDB1149
GeneTree (enSembl)ENSG00000176194
Phylogenetic Trees/Animal Genes : TreeFamCIDEA
HOVERGENO60543
HOGENOMO60543
Homologs : HomoloGeneCIDEA
Homology/Alignments : Family Browser (UCSC)CIDEA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIDEA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIDEA
dbVarCIDEA
ClinVarCIDEA
1000_GenomesCIDEA 
Exome Variant ServerCIDEA
ExAC (Exome Aggregation Consortium)CIDEA (select the gene name)
Genetic variants : HAPMAP1149
Genomic Variants (DGV)CIDEA [DGVbeta]
DECIPHERCIDEA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIDEA 
Mutations
ICGC Data PortalCIDEA 
TCGA Data PortalCIDEA 
Broad Tumor PortalCIDEA
OASIS PortalCIDEA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIDEA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCIDEA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CIDEA
DgiDB (Drug Gene Interaction Database)CIDEA
DoCM (Curated mutations)CIDEA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIDEA (select a term)
intoGenCIDEA
Cancer3DCIDEA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604440   
Orphanet
MedgenCIDEA
Genetic Testing Registry CIDEA
NextProtO60543 [Medical]
TSGene1149
GENETestsCIDEA
Target ValidationCIDEA
Huge Navigator CIDEA [HugePedia]
snp3D : Map Gene to Disease1149
BioCentury BCIQCIDEA
ClinGenCIDEA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1149
Chemical/Pharm GKB GenePA26514
Clinical trialCIDEA
Miscellaneous
canSAR (ICR)CIDEA (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIDEA
EVEXCIDEA
GoPubMedCIDEA
iHOPCIDEA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:29 CEST 2017

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