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CIDEB (cell death-inducing DFFA-like effector b)

Identity

Other alias-
HGNC (Hugo) CIDEB
LocusID (NCBI) 27141
Atlas_Id 40085
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24305193 and ends at 24311377 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CIDEB (14q12) / ADCY4 (14q12)NOLC1 (10q24.32) / CIDEB (14q12)CIDEB 14q12 / ADCY4 14q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CIDEB   1977
Cards
Entrez_Gene (NCBI)CIDEB  27141  cell death-inducing DFFA-like effector b
Aliases
GeneCards (Weizmann)CIDEB
Ensembl hg19 (Hinxton)ENSG00000136305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136305 [Gene_View]  chr14:24305193-24311377 [Contig_View]  CIDEB [Vega]
ICGC DataPortalENSG00000136305
TCGA cBioPortalCIDEB
AceView (NCBI)CIDEB
Genatlas (Paris)CIDEB
WikiGenes27141
SOURCE (Princeton)CIDEB
Genetics Home Reference (NIH)CIDEB
Genomic and cartography
GoldenPath hg38 (UCSC)CIDEB  -     chr14:24305193-24311377 -  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIDEB  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblCIDEB - 14q12 [CytoView hg19]  CIDEB - 14q12 [CytoView hg38]
Mapping of homologs : NCBICIDEB [Mapview hg19]  CIDEB [Mapview hg38]
OMIM604441   
Gene and transcription
Genbank (Entrez)AF190901 AF218586 AF544398 AI242048 AK000387
RefSeq transcript (Entrez)NM_001318807 NM_014430
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CIDEB
Cluster EST : UnigeneHs.708040 [ NCBI ]
CGAP (NCI)Hs.708040
Alternative Splicing GalleryENSG00000136305
Gene ExpressionCIDEB [ NCBI-GEO ]   CIDEB [ EBI - ARRAY_EXPRESS ]   CIDEB [ SEEK ]   CIDEB [ MEM ]
Gene Expression Viewer (FireBrowse)CIDEB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27141
GTEX Portal (Tissue expression)CIDEB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHD4
Splice isoforms : SwissVarQ9UHD4
PhosPhoSitePlusQ9UHD4
Domaine pattern : Prosite (Expaxy)CIDE_N (PS51135)   
Domains : Interpro (EBI)CIDE-N_dom   
Domain families : Pfam (Sanger)CIDE-N (PF02017)   
Domain families : Pfam (NCBI)pfam02017   
Domain families : Smart (EMBL)CAD (SM00266)  
Conserved Domain (NCBI)CIDEB
DMDM Disease mutations27141
Blocks (Seattle)CIDEB
PDB (SRS)1D4B   
PDB (PDBSum)1D4B   
PDB (IMB)1D4B   
PDB (RSDB)1D4B   
Structural Biology KnowledgeBase1D4B   
SCOP (Structural Classification of Proteins)1D4B   
CATH (Classification of proteins structures)1D4B   
SuperfamilyQ9UHD4
Human Protein AtlasENSG00000136305
Peptide AtlasQ9UHD4
HPRD11981
IPIIPI00219215   IPI01025570   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHD4
IntAct (EBI)Q9UHD4
FunCoupENSG00000136305
BioGRIDCIDEB
STRING (EMBL)CIDEB
ZODIACCIDEB
Ontologies - Pathways
QuickGOQ9UHD4
Ontology : AmiGOprotein binding  lipid particle  cytosol  apoptotic process  intrinsic apoptotic signaling pathway in response to DNA damage  positive regulation of cell death  identical protein binding  perinuclear region of cytoplasm  positive regulation of release of cytochrome c from mitochondria  execution phase of apoptosis  activation of cysteine-type endopeptidase activity  
Ontology : EGO-EBIprotein binding  lipid particle  cytosol  apoptotic process  intrinsic apoptotic signaling pathway in response to DNA damage  positive regulation of cell death  identical protein binding  perinuclear region of cytoplasm  positive regulation of release of cytochrome c from mitochondria  execution phase of apoptosis  activation of cysteine-type endopeptidase activity  
NDEx NetworkCIDEB
Atlas of Cancer Signalling NetworkCIDEB
Wikipedia pathwaysCIDEB
Orthology - Evolution
OrthoDB27141
GeneTree (enSembl)ENSG00000136305
Phylogenetic Trees/Animal Genes : TreeFamCIDEB
HOVERGENQ9UHD4
HOGENOMQ9UHD4
Homologs : HomoloGeneCIDEB
Homology/Alignments : Family Browser (UCSC)CIDEB
Gene fusions - Rearrangements
Fusion: TCGACIDEB 14q12 ADCY4 14q12 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIDEB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIDEB
dbVarCIDEB
ClinVarCIDEB
1000_GenomesCIDEB 
Exome Variant ServerCIDEB
ExAC (Exome Aggregation Consortium)CIDEB (select the gene name)
Genetic variants : HAPMAP27141
Genomic Variants (DGV)CIDEB [DGVbeta]
DECIPHERCIDEB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIDEB 
Mutations
ICGC Data PortalCIDEB 
TCGA Data PortalCIDEB 
Broad Tumor PortalCIDEB
OASIS PortalCIDEB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIDEB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCIDEB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CIDEB
DgiDB (Drug Gene Interaction Database)CIDEB
DoCM (Curated mutations)CIDEB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIDEB (select a term)
intoGenCIDEB
Cancer3DCIDEB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604441   
Orphanet
MedgenCIDEB
Genetic Testing Registry CIDEB
NextProtQ9UHD4 [Medical]
TSGene27141
GENETestsCIDEB
Target ValidationCIDEB
Huge Navigator CIDEB [HugePedia]
snp3D : Map Gene to Disease27141
BioCentury BCIQCIDEB
ClinGenCIDEB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27141
Chemical/Pharm GKB GenePA26515
Clinical trialCIDEB
Miscellaneous
canSAR (ICR)CIDEB (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIDEB
EVEXCIDEB
GoPubMedCIDEB
iHOPCIDEB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:02:32 CEST 2017

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