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CIDEC (cell death inducing DFFA like effector c)

Identity

Alias_namescell death-inducing DFFA-like effector c
Alias_symbol (synonym)CIDE-3
FLJ20871
Fsp27
Other aliasCIDE3
FPLD5
FSP27
HGNC (Hugo) CIDEC
LocusID (NCBI) 63924
Atlas_Id 52868
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9866710 and ends at 9880254 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		BVES (6q21) / CIDEC (3p25.3)CIDEC (3p25.3) / THBS1 (15q14)ERG (21q22.2) / CIDEC (3p25.3)
PDS5B (13q13.1) / CIDEC (3p25.3)PTPN6 (12p13.31) / CIDEC (3p25.3)SPTAN1 (9q34.11) / CIDEC (3p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CIDEC   24229
Cards
Entrez_Gene (NCBI)CIDEC  63924  cell death inducing DFFA like effector c
AliasesCIDE-3; CIDE3; FPLD5; FSP27
GeneCards (Weizmann)CIDEC
Ensembl hg19 (Hinxton)ENSG00000187288 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187288 [Gene_View]  chr3:9866710-9880254 [Contig_View]  CIDEC [Vega]
ICGC DataPortalENSG00000187288
TCGA cBioPortalCIDEC
AceView (NCBI)CIDEC
Genatlas (Paris)CIDEC
WikiGenes63924
SOURCE (Princeton)CIDEC
Genetics Home Reference (NIH)CIDEC
Genomic and cartography
GoldenPath hg38 (UCSC)CIDEC  -     chr3:9866710-9880254 -  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIDEC  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblCIDEC - 3p25.3 [CytoView hg19]  CIDEC - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBICIDEC [Mapview hg19]  CIDEC [Mapview hg38]
OMIM612120   615238   
Gene and transcription
Genbank (Entrez)AF303893 AI460316 AK024524 AK024530 AL598630
RefSeq transcript (Entrez)NM_001199551 NM_001199552 NM_001199623 NM_001321142 NM_001321143 NM_001321144 NM_022094
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CIDEC
Cluster EST : UnigeneHs.567562 [ NCBI ]
CGAP (NCI)Hs.567562
Alternative Splicing GalleryENSG00000187288
Gene ExpressionCIDEC [ NCBI-GEO ]   CIDEC [ EBI - ARRAY_EXPRESS ]   CIDEC [ SEEK ]   CIDEC [ MEM ]
Gene Expression Viewer (FireBrowse)CIDEC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63924
GTEX Portal (Tissue expression)CIDEC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AQ7
Splice isoforms : SwissVarQ96AQ7
PhosPhoSitePlusQ96AQ7
Domaine pattern : Prosite (Expaxy)CIDE_N (PS51135)   
Domains : Interpro (EBI)CIDE-N_dom   
Domain families : Pfam (Sanger)CIDE-N (PF02017)   
Domain families : Pfam (NCBI)pfam02017   
Domain families : Smart (EMBL)CAD (SM00266)  
Conserved Domain (NCBI)CIDEC
DMDM Disease mutations63924
Blocks (Seattle)CIDEC
SuperfamilyQ96AQ7
Human Protein AtlasENSG00000187288
Peptide AtlasQ96AQ7
HPRD13060
IPIIPI00073148   IPI00549777   IPI00975994   IPI00470530   IPI00926607   
Protein Interaction databases
DIP (DOE-UCLA)Q96AQ7
IntAct (EBI)Q96AQ7
FunCoupENSG00000187288
BioGRIDCIDEC
STRING (EMBL)CIDEC
ZODIACCIDEC
Ontologies - Pathways
QuickGOQ96AQ7
Ontology : AmiGOmolecular_function  nucleus  endoplasmic reticulum  lipid particle  cytosol  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  lipid particle organization  lipoprotein metabolic process  regulation of apoptotic process  execution phase of apoptosis  
Ontology : EGO-EBImolecular_function  nucleus  endoplasmic reticulum  lipid particle  cytosol  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  lipid particle organization  lipoprotein metabolic process  regulation of apoptotic process  execution phase of apoptosis  
NDEx NetworkCIDEC
Atlas of Cancer Signalling NetworkCIDEC
Wikipedia pathwaysCIDEC
Orthology - Evolution
OrthoDB63924
GeneTree (enSembl)ENSG00000187288
Phylogenetic Trees/Animal Genes : TreeFamCIDEC
HOVERGENQ96AQ7
HOGENOMQ96AQ7
Homologs : HomoloGeneCIDEC
Homology/Alignments : Family Browser (UCSC)CIDEC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIDEC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIDEC
dbVarCIDEC
ClinVarCIDEC
1000_GenomesCIDEC 
Exome Variant ServerCIDEC
ExAC (Exome Aggregation Consortium)CIDEC (select the gene name)
Genetic variants : HAPMAP63924
Genomic Variants (DGV)CIDEC [DGVbeta]
DECIPHERCIDEC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIDEC 
Mutations
ICGC Data PortalCIDEC 
TCGA Data PortalCIDEC 
Broad Tumor PortalCIDEC
OASIS PortalCIDEC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIDEC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCIDEC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CIDEC
DgiDB (Drug Gene Interaction Database)CIDEC
DoCM (Curated mutations)CIDEC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIDEC (select a term)
intoGenCIDEC
Cancer3DCIDEC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612120    615238   
Orphanet23309   
MedgenCIDEC
Genetic Testing Registry CIDEC
NextProtQ96AQ7 [Medical]
TSGene63924
GENETestsCIDEC
Target ValidationCIDEC
Huge Navigator CIDEC [HugePedia]
snp3D : Map Gene to Disease63924
BioCentury BCIQCIDEC
ClinGenCIDEC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63924
Chemical/Pharm GKB GenePA134923736
Clinical trialCIDEC
Miscellaneous
canSAR (ICR)CIDEC (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIDEC
EVEXCIDEC
GoPubMedCIDEC
iHOPCIDEC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:30 CEST 2017
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