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CILP (cartilage intermediate layer protein)

Identity

Alias_namescartilage intermediate layer protein, nucleotide pyrophosphohydrolase
Alias_symbol (synonym)HsT18872
Other aliasCILP-1
HGNC (Hugo) CILP
LocusID (NCBI) 8483
Atlas_Id 61833
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65195999 and ends at 65211502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDK16 (Xp11.23) / CILP (15q22.31)CILP (15q22.31) / RAB11FIP4 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CILP   1980
Cards
Entrez_Gene (NCBI)CILP  8483  cartilage intermediate layer protein
AliasesCILP-1; HsT18872
GeneCards (Weizmann)CILP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:65195999-65211502 [Contig_View]  CILP [Vega]
TCGA cBioPortalCILP
AceView (NCBI)CILP
Genatlas (Paris)CILP
WikiGenes8483
SOURCE (Princeton)CILP
Genetics Home Reference (NIH)CILP
Genomic and cartography
GoldenPath hg38 (UCSC)CILP  -     chr15:65195999-65211502 -  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CILP  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblCILP - 15q22.31 [CytoView hg19]  CILP - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBICILP [Mapview hg19]  CILP [Mapview hg38]
OMIM603489   603932   
Gene and transcription
Genbank (Entrez)AF035408 AK225652 AK225926 AK313352 AL602624
RefSeq transcript (Entrez)NM_003613
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CILP
Cluster EST : UnigeneHs.442180 [ NCBI ]
CGAP (NCI)Hs.442180
Gene ExpressionCILP [ NCBI-GEO ]   CILP [ EBI - ARRAY_EXPRESS ]   CILP [ SEEK ]   CILP [ MEM ]
Gene Expression Viewer (FireBrowse)CILP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8483
GTEX Portal (Tissue expression)CILP
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75339   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75339  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75339
Splice isoforms : SwissVarO75339
PhosPhoSitePlusO75339
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    TSP1 (PS50092)   
Domains : Interpro (EBI)CarboxyPept-like_regulatory    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    TSP1_rpt    WxxW_domain   
Domain families : Pfam (Sanger)Mucin2_WxxW (PF13330)    TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam13330    pfam00090   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  TSP1 (SM00209)  
Conserved Domain (NCBI)CILP
DMDM Disease mutations8483
Blocks (Seattle)CILP
SuperfamilyO75339
Peptide AtlasO75339
HPRD11942
IPIIPI00289275   
Protein Interaction databases
DIP (DOE-UCLA)O75339
IntAct (EBI)O75339
BioGRIDCILP
STRING (EMBL)CILP
ZODIACCILP
Ontologies - Pathways
QuickGOO75339
Ontology : AmiGOalkaline phosphatase activity  nucleotide diphosphatase activity  proteinaceous extracellular matrix  extracellular space  extracellular matrix  negative regulation of insulin-like growth factor receptor signaling pathway  extracellular exosome  
Ontology : EGO-EBIalkaline phosphatase activity  nucleotide diphosphatase activity  proteinaceous extracellular matrix  extracellular space  extracellular matrix  negative regulation of insulin-like growth factor receptor signaling pathway  extracellular exosome  
NDEx NetworkCILP
Atlas of Cancer Signalling NetworkCILP
Wikipedia pathwaysCILP
Orthology - Evolution
OrthoDB8483
Phylogenetic Trees/Animal Genes : TreeFamCILP
HOVERGENO75339
HOGENOMO75339
Homologs : HomoloGeneCILP
Homology/Alignments : Family Browser (UCSC)CILP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCILP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CILP
dbVarCILP
ClinVarCILP
1000_GenomesCILP 
Exome Variant ServerCILP
ExAC (Exome Aggregation Consortium)CILP (select the gene name)
Genetic variants : HAPMAP8483
Genomic Variants (DGV)CILP [DGVbeta]
DECIPHERCILP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCILP 
Mutations
ICGC Data PortalCILP 
TCGA Data PortalCILP 
Broad Tumor PortalCILP
OASIS PortalCILP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCILP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCILP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CILP
DgiDB (Drug Gene Interaction Database)CILP
DoCM (Curated mutations)CILP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CILP (select a term)
intoGenCILP
Cancer3DCILP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603489    603932   
Orphanet
MedgenCILP
Genetic Testing Registry CILP
NextProtO75339 [Medical]
TSGene8483
GENETestsCILP
Target ValidationCILP
Huge Navigator CILP [HugePedia]
snp3D : Map Gene to Disease8483
BioCentury BCIQCILP
ClinGenCILP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8483
Chemical/Pharm GKB GenePA26518
Clinical trialCILP
Miscellaneous
canSAR (ICR)CILP (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCILP
EVEXCILP
GoPubMedCILP
iHOPCILP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:43:42 CEST 2017

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