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CILP2 (cartilage intermediate layer protein 2)

Identity

Alias_symbol (synonym)MGC45771
Other aliasCLIP-2
HGNC (Hugo) CILP2
LocusID (NCBI) 148113
Atlas_Id 61834
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19649074 and ends at 19657468 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CILP2   24213
Cards
Entrez_Gene (NCBI)CILP2  148113  cartilage intermediate layer protein 2
AliasesCLIP-2
GeneCards (Weizmann)CILP2
Ensembl hg19 (Hinxton)ENSG00000160161 [Gene_View]  chr19:19649074-19657468 [Contig_View]  CILP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160161 [Gene_View]  chr19:19649074-19657468 [Contig_View]  CILP2 [Vega]
ICGC DataPortalENSG00000160161
TCGA cBioPortalCILP2
AceView (NCBI)CILP2
Genatlas (Paris)CILP2
WikiGenes148113
SOURCE (Princeton)CILP2
Genetics Home Reference (NIH)CILP2
Genomic and cartography
GoldenPath hg19 (UCSC)CILP2  -     chr19:19649074-19657468 +  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CILP2  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblCILP2 - 19p13.11 [CytoView hg19]  CILP2 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBICILP2 [Mapview hg19]  CILP2 [Mapview hg38]
OMIM612419   
Gene and transcription
Genbank (Entrez)AF542080 AK127735 AK314213 BC018939 BC034926
RefSeq transcript (Entrez)NM_153221
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)CILP2
Cluster EST : UnigeneHs.279574 [ NCBI ]
CGAP (NCI)Hs.279574
Alternative Splicing GalleryENSG00000160161
Gene ExpressionCILP2 [ NCBI-GEO ]   CILP2 [ EBI - ARRAY_EXPRESS ]   CILP2 [ SEEK ]   CILP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CILP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148113
GTEX Portal (Tissue expression)CILP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUL8
Splice isoforms : SwissVarQ8IUL8
PhosPhoSitePlusQ8IUL8
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    TSP1 (PS50092)   
Domains : Interpro (EBI)CarboxyPept-like_regulatory    Ig-like_dom    Ig-like_fold    Ig_sub2    Thrombospondin_1_rpt    WxxW_domain   
Domain families : Pfam (Sanger)Mucin2_WxxW (PF13330)    TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam13330    pfam00090   
Domain families : Smart (EMBL)IGc2 (SM00408)  TSP1 (SM00209)  
Conserved Domain (NCBI)CILP2
DMDM Disease mutations148113
Blocks (Seattle)CILP2
SuperfamilyQ8IUL8
Human Protein AtlasENSG00000160161
Peptide AtlasQ8IUL8
HPRD16714
IPIIPI00216780   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUL8
IntAct (EBI)Q8IUL8
FunCoupENSG00000160161
BioGRIDCILP2
STRING (EMBL)CILP2
ZODIACCILP2
Ontologies - Pathways
QuickGOQ8IUL8
Ontology : AmiGOalkaline phosphatase activity  nucleotide diphosphatase activity  proteinaceous extracellular matrix  extracellular exosome  
Ontology : EGO-EBIalkaline phosphatase activity  nucleotide diphosphatase activity  proteinaceous extracellular matrix  extracellular exosome  
NDEx NetworkCILP2
Atlas of Cancer Signalling NetworkCILP2
Wikipedia pathwaysCILP2
Orthology - Evolution
OrthoDB148113
GeneTree (enSembl)ENSG00000160161
Phylogenetic Trees/Animal Genes : TreeFamCILP2
HOVERGENQ8IUL8
HOGENOMQ8IUL8
Homologs : HomoloGeneCILP2
Homology/Alignments : Family Browser (UCSC)CILP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCILP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CILP2
dbVarCILP2
ClinVarCILP2
1000_GenomesCILP2 
Exome Variant ServerCILP2
ExAC (Exome Aggregation Consortium)CILP2 (select the gene name)
Genetic variants : HAPMAP148113
Genomic Variants (DGV)CILP2 [DGVbeta]
DECIPHER (Syndromes)19:19649074-19657468  ENSG00000160161
CONAN: Copy Number AnalysisCILP2 
Mutations
ICGC Data PortalCILP2 
TCGA Data PortalCILP2 
Broad Tumor PortalCILP2
OASIS PortalCILP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCILP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCILP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CILP2
DgiDB (Drug Gene Interaction Database)CILP2
DoCM (Curated mutations)CILP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CILP2 (select a term)
intoGenCILP2
Cancer3DCILP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612419   
Orphanet
MedgenCILP2
Genetic Testing Registry CILP2
NextProtQ8IUL8 [Medical]
TSGene148113
GENETestsCILP2
Huge Navigator CILP2 [HugePedia]
snp3D : Map Gene to Disease148113
BioCentury BCIQCILP2
ClinGenCILP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148113
Chemical/Pharm GKB GenePA134970563
Clinical trialCILP2
Miscellaneous
canSAR (ICR)CILP2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCILP2
EVEXCILP2
GoPubMedCILP2
iHOPCILP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:31 CET 2017

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