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CIPC (CLOCK interacting pacemaker)

Identity

Alias_namescircadian
KIAA1737
Other alias
HGNC (Hugo) CIPC
LocusID (NCBI) 85457
Atlas_Id 56096
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 77098235 and ends at 77117287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CIPC (14q24.3) / CPM (12q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CIPC   20365
Cards
Entrez_Gene (NCBI)CIPC  85457  CLOCK interacting pacemaker
AliasesKIAA1737
GeneCards (Weizmann)CIPC
Ensembl hg19 (Hinxton)ENSG00000198894 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198894 [Gene_View]  chr14:77098235-77117287 [Contig_View]  CIPC [Vega]
ICGC DataPortalENSG00000198894
TCGA cBioPortalCIPC
AceView (NCBI)CIPC
Genatlas (Paris)CIPC
WikiGenes85457
SOURCE (Princeton)CIPC
Genetics Home Reference (NIH)CIPC
Genomic and cartography
GoldenPath hg38 (UCSC)CIPC  -     chr14:77098235-77117287 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIPC  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblCIPC - 14q24.3 [CytoView hg19]  CIPC - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBICIPC [Mapview hg19]  CIPC [Mapview hg38]
OMIM616995   
Gene and transcription
Genbank (Entrez)AB051524 AK024737 AK096603 AK315124 AL834514
RefSeq transcript (Entrez)NM_033426
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CIPC
Cluster EST : UnigeneHs.709066 [ NCBI ]
CGAP (NCI)Hs.709066
Alternative Splicing GalleryENSG00000198894
Gene ExpressionCIPC [ NCBI-GEO ]   CIPC [ EBI - ARRAY_EXPRESS ]   CIPC [ SEEK ]   CIPC [ MEM ]
Gene Expression Viewer (FireBrowse)CIPC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85457
GTEX Portal (Tissue expression)CIPC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0C6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0C6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0C6
Splice isoforms : SwissVarQ9C0C6
PhosPhoSitePlusQ9C0C6
Domains : Interpro (EBI)CIPC   
Domain families : Pfam (Sanger)CiPC (PF15800)   
Domain families : Pfam (NCBI)pfam15800   
Conserved Domain (NCBI)CIPC
DMDM Disease mutations85457
Blocks (Seattle)CIPC
SuperfamilyQ9C0C6
Human Protein AtlasENSG00000198894
Peptide AtlasQ9C0C6
HPRD13890
IPIIPI00412997   IPI01024934   IPI01024827   IPI01025953   IPI01026252   IPI01026122   IPI01026495   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0C6
IntAct (EBI)Q9C0C6
FunCoupENSG00000198894
BioGRIDCIPC
STRING (EMBL)CIPC
ZODIACCIPC
Ontologies - Pathways
QuickGOQ9C0C6
Ontology : AmiGOprotein binding  nucleus  cytosol  transcription, DNA-templated  negative regulation of circadian rhythm  negative regulation of transcription, DNA-templated  rhythmic process  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  transcription, DNA-templated  negative regulation of circadian rhythm  negative regulation of transcription, DNA-templated  rhythmic process  
NDEx NetworkCIPC
Atlas of Cancer Signalling NetworkCIPC
Wikipedia pathwaysCIPC
Orthology - Evolution
OrthoDB85457
GeneTree (enSembl)ENSG00000198894
Phylogenetic Trees/Animal Genes : TreeFamCIPC
HOVERGENQ9C0C6
HOGENOMQ9C0C6
Homologs : HomoloGeneCIPC
Homology/Alignments : Family Browser (UCSC)CIPC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIPC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIPC
dbVarCIPC
ClinVarCIPC
1000_GenomesCIPC 
Exome Variant ServerCIPC
ExAC (Exome Aggregation Consortium)CIPC (select the gene name)
Genetic variants : HAPMAP85457
Genomic Variants (DGV)CIPC [DGVbeta]
DECIPHERCIPC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIPC 
Mutations
ICGC Data PortalCIPC 
TCGA Data PortalCIPC 
Broad Tumor PortalCIPC
OASIS PortalCIPC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCIPC
BioMutasearch CIPC
DgiDB (Drug Gene Interaction Database)CIPC
DoCM (Curated mutations)CIPC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIPC (select a term)
intoGenCIPC
Cancer3DCIPC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616995   
Orphanet
MedgenCIPC
Genetic Testing Registry CIPC
NextProtQ9C0C6 [Medical]
TSGene85457
GENETestsCIPC
Target ValidationCIPC
Huge Navigator CIPC [HugePedia]
snp3D : Map Gene to Disease85457
BioCentury BCIQCIPC
ClinGenCIPC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85457
Chemical/Pharm GKB GenePA134877961
Clinical trialCIPC
Miscellaneous
canSAR (ICR)CIPC (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIPC
EVEXCIPC
GoPubMedCIPC
iHOPCIPC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:57 CEST 2017

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