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CIRBP-AS1 (CIRBP antisense RNA 1)

Identity

Alias_namesC19orf23
chromosome 19 open reading frame 23
CIRBP antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)MGC39338
Other alias
HGNC (Hugo) CIRBP-AS1
LocusID (NCBI) 148046
Atlas_Id 61837
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1267471 and ends at 1270260 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CIRBP-AS1 (19p13.3) / ITPK1 (14q32.12)CIRBP-AS1 (19p13.3) / OBSCN (1q42.13)CIRBP-AS1 (19p13.3) / PKNOX1 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CIRBP-AS1   28588
Cards
Entrez_Gene (NCBI)CIRBP-AS1  148046  CIRBP antisense RNA 1
AliasesC19orf23
GeneCards (Weizmann)CIRBP-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:1267471-1270260 [Contig_View]  CIRBP-AS1 [Vega]
TCGA cBioPortalCIRBP-AS1
AceView (NCBI)CIRBP-AS1
Genatlas (Paris)CIRBP-AS1
WikiGenes148046
SOURCE (Princeton)CIRBP-AS1
Genetics Home Reference (NIH)CIRBP-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)CIRBP-AS1  -     chr19:1267471-1270260 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIRBP-AS1  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblCIRBP-AS1 - 19p13.3 [CytoView hg19]  CIRBP-AS1 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICIRBP-AS1 [Mapview hg19]  CIRBP-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC026041 HQ447757
RefSeq transcript (Entrez)NM_152480
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CIRBP-AS1
Cluster EST : UnigeneHs.438829 [ NCBI ]
CGAP (NCI)Hs.438829
Gene ExpressionCIRBP-AS1 [ NCBI-GEO ]   CIRBP-AS1 [ EBI - ARRAY_EXPRESS ]   CIRBP-AS1 [ SEEK ]   CIRBP-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CIRBP-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148046
GTEX Portal (Tissue expression)CIRBP-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBR5
Splice isoforms : SwissVarQ8TBR5
PhosPhoSitePlusQ8TBR5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CIRBP-AS1
DMDM Disease mutations148046
Blocks (Seattle)CIRBP-AS1
SuperfamilyQ8TBR5
Peptide AtlasQ8TBR5
HPRD16626
IPIIPI00152246   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBR5
IntAct (EBI)Q8TBR5
BioGRIDCIRBP-AS1
STRING (EMBL)CIRBP-AS1
ZODIACCIRBP-AS1
Ontologies - Pathways
QuickGOQ8TBR5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCIRBP-AS1
Atlas of Cancer Signalling NetworkCIRBP-AS1
Wikipedia pathwaysCIRBP-AS1
Orthology - Evolution
OrthoDB148046
Phylogenetic Trees/Animal Genes : TreeFamCIRBP-AS1
HOVERGENQ8TBR5
HOGENOMQ8TBR5
Homologs : HomoloGeneCIRBP-AS1
Homology/Alignments : Family Browser (UCSC)CIRBP-AS1
Gene fusions - Rearrangements
Tumor Fusion PortalCIRBP-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIRBP-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIRBP-AS1
dbVarCIRBP-AS1
ClinVarCIRBP-AS1
1000_GenomesCIRBP-AS1 
Exome Variant ServerCIRBP-AS1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP148046
Genomic Variants (DGV)CIRBP-AS1 [DGVbeta]
DECIPHERCIRBP-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIRBP-AS1 
Mutations
ICGC Data PortalCIRBP-AS1 
TCGA Data PortalCIRBP-AS1 
Broad Tumor PortalCIRBP-AS1
OASIS PortalCIRBP-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCIRBP-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CIRBP-AS1
DgiDB (Drug Gene Interaction Database)CIRBP-AS1
DoCM (Curated mutations)CIRBP-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIRBP-AS1 (select a term)
intoGenCIRBP-AS1
Cancer3DCIRBP-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCIRBP-AS1
MedgenCIRBP-AS1
Genetic Testing Registry CIRBP-AS1
NextProtQ8TBR5 [Medical]
TSGene148046
GENETestsCIRBP-AS1
Target ValidationCIRBP-AS1
Huge Navigator CIRBP-AS1 [HugePedia]
snp3D : Map Gene to Disease148046
BioCentury BCIQCIRBP-AS1
ClinGenCIRBP-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148046
Chemical/Pharm GKB GenePA134886899
Clinical trialCIRBP-AS1
Miscellaneous
canSAR (ICR)CIRBP-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIRBP-AS1
EVEXCIRBP-AS1
GoPubMedCIRBP-AS1
iHOPCIRBP-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:21 CET 2017

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