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CIRBP (cold inducible RNA binding protein)

Identity

Alias_namescold inducible RNA-binding protein
Alias_symbol (synonym)CIRP
Other alias
HGNC (Hugo) CIRBP
LocusID (NCBI) 1153
Atlas_Id 45930
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1269267 and ends at 1273171 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CIRBP (19p13.3) / C19ORF24 ()CIRBP (19p13.3) / C19orf24 (19p13.3)CIRBP (19p13.3) / CIRBP (19p13.3)
CIRBP (19p13.3) / UGP2 (2p15)PNLIPRP3 (10q25.3) / CIRBP (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CIRBP   1982
Cards
Entrez_Gene (NCBI)CIRBP  1153  cold inducible RNA binding protein
AliasesCIRP
GeneCards (Weizmann)CIRBP
Ensembl hg19 (Hinxton)ENSG00000099622 [Gene_View]  chr19:1269267-1273171 [Contig_View]  CIRBP [Vega]
Ensembl hg38 (Hinxton)ENSG00000099622 [Gene_View]  chr19:1269267-1273171 [Contig_View]  CIRBP [Vega]
ICGC DataPortalENSG00000099622
TCGA cBioPortalCIRBP
AceView (NCBI)CIRBP
Genatlas (Paris)CIRBP
WikiGenes1153
SOURCE (Princeton)CIRBP
Genetics Home Reference (NIH)CIRBP
Genomic and cartography
GoldenPath hg19 (UCSC)CIRBP  -     chr19:1269267-1273171 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CIRBP  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblCIRBP - 19p13.3 [CytoView hg19]  CIRBP - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBICIRBP [Mapview hg19]  CIRBP [Mapview hg38]
OMIM602649   
Gene and transcription
Genbank (Entrez)AB451225 AB451348 AF021336 AK094781 AK095781
RefSeq transcript (Entrez)NM_001280 NM_001300815 NM_001300829
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)CIRBP
Cluster EST : UnigeneHs.634522 [ NCBI ]
CGAP (NCI)Hs.634522
Alternative Splicing GalleryENSG00000099622
Gene ExpressionCIRBP [ NCBI-GEO ]   CIRBP [ EBI - ARRAY_EXPRESS ]   CIRBP [ SEEK ]   CIRBP [ MEM ]
Gene Expression Viewer (FireBrowse)CIRBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1153
GTEX Portal (Tissue expression)CIRBP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14011   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14011  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14011
Splice isoforms : SwissVarQ14011
PhosPhoSitePlusQ14011
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)CIRBP
DMDM Disease mutations1153
Blocks (Seattle)CIRBP
PDB (SRS)1X5S   
PDB (PDBSum)1X5S   
PDB (IMB)1X5S   
PDB (RSDB)1X5S   
Structural Biology KnowledgeBase1X5S   
SCOP (Structural Classification of Proteins)1X5S   
CATH (Classification of proteins structures)1X5S   
SuperfamilyQ14011
Human Protein AtlasENSG00000099622
Peptide AtlasQ14011
HPRD08375
IPIIPI01018300   IPI00909097   IPI00641579   IPI00443657   
Protein Interaction databases
DIP (DOE-UCLA)Q14011
IntAct (EBI)Q14011
FunCoupENSG00000099622
BioGRIDCIRBP
STRING (EMBL)CIRBP
ZODIACCIRBP
Ontologies - Pathways
QuickGOQ14011
Ontology : AmiGOnucleotide binding  mRNA 3'-UTR binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytoplasm  response to cold  response to UV  cytoplasmic stress granule  negative regulation of translation  translation repressor activity  stress granule assembly  poly(A) RNA binding  positive regulation of translation  mRNA stabilization  small ribosomal subunit rRNA binding  
Ontology : EGO-EBInucleotide binding  mRNA 3'-UTR binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytoplasm  response to cold  response to UV  cytoplasmic stress granule  negative regulation of translation  translation repressor activity  stress granule assembly  poly(A) RNA binding  positive regulation of translation  mRNA stabilization  small ribosomal subunit rRNA binding  
NDEx NetworkCIRBP
Atlas of Cancer Signalling NetworkCIRBP
Wikipedia pathwaysCIRBP
Orthology - Evolution
OrthoDB1153
GeneTree (enSembl)ENSG00000099622
Phylogenetic Trees/Animal Genes : TreeFamCIRBP
HOVERGENQ14011
HOGENOMQ14011
Homologs : HomoloGeneCIRBP
Homology/Alignments : Family Browser (UCSC)CIRBP
Gene fusions - Rearrangements
Fusion : MitelmanCIRBP/UGP2 [19p13.3/2p15]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIRBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIRBP
dbVarCIRBP
ClinVarCIRBP
1000_GenomesCIRBP 
Exome Variant ServerCIRBP
ExAC (Exome Aggregation Consortium)CIRBP (select the gene name)
Genetic variants : HAPMAP1153
Genomic Variants (DGV)CIRBP [DGVbeta]
DECIPHER (Syndromes)19:1269267-1273171  ENSG00000099622
CONAN: Copy Number AnalysisCIRBP 
Mutations
ICGC Data PortalCIRBP 
TCGA Data PortalCIRBP 
Broad Tumor PortalCIRBP
OASIS PortalCIRBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIRBP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCIRBP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CIRBP
DgiDB (Drug Gene Interaction Database)CIRBP
DoCM (Curated mutations)CIRBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIRBP (select a term)
intoGenCIRBP
Cancer3DCIRBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602649   
Orphanet
MedgenCIRBP
Genetic Testing Registry CIRBP
NextProtQ14011 [Medical]
TSGene1153
GENETestsCIRBP
Huge Navigator CIRBP [HugePedia]
snp3D : Map Gene to Disease1153
BioCentury BCIQCIRBP
ClinGenCIRBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1153
Chemical/Pharm GKB GenePA26519
Clinical trialCIRBP
Miscellaneous
canSAR (ICR)CIRBP (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIRBP
EVEXCIRBP
GoPubMedCIRBP
iHOPCIRBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:40 CEST 2017

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