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CIRBP (cold inducible RNA binding protein)

Identity

Alias (NCBI)CIRP
HGNC (Hugo) CIRBP
HGNC Alias symbCIRP
HGNC Alias nameCold-inducible RNA-binding protein
 glycine-rich RNA binding protein
HGNC Previous namecold inducible RNA-binding protein
LocusID (NCBI) 1153
Atlas_Id 45930
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1269332 and ends at 1274809 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CIRBP (19p13.3) / C19ORF24 ()CIRBP (19p13.3) / C19orf24 (19p13.3)CIRBP (19p13.3) / CIRBP (19p13.3)
CIRBP (19p13.3) / UGP2 (2p15)PNLIPRP3 (10q25.3) / CIRBP (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CIRBP   1982
Cards
Entrez_Gene (NCBI)CIRBP    cold inducible RNA binding protein
AliasesCIRP
GeneCards (Weizmann)CIRBP
Ensembl hg19 (Hinxton)ENSG00000099622 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099622 [Gene_View]  ENSG00000099622 [Sequence]  chr19:1269332-1274809 [Contig_View]  CIRBP [Vega]
ICGC DataPortalENSG00000099622
TCGA cBioPortalCIRBP
AceView (NCBI)CIRBP
Genatlas (Paris)CIRBP
SOURCE (Princeton)CIRBP
Genetics Home Reference (NIH)CIRBP
Genomic and cartography
GoldenPath hg38 (UCSC)CIRBP  -     chr19:1269332-1274809 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIRBP  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathCIRBP - 19p13.3 [CytoView hg19]  CIRBP - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000099622
Genome Data Viewer NCBICIRBP [Mapview hg19]  
OMIM602649   
Gene and transcription
Genbank (Entrez)AB451225 AB451348 AF021336 AK094781 AK095781
RefSeq transcript (Entrez)NM_001280 NM_001300815 NM_001300829
Consensus coding sequences : CCDS (NCBI)CIRBP
Gene ExpressionCIRBP [ NCBI-GEO ]   CIRBP [ EBI - ARRAY_EXPRESS ]   CIRBP [ SEEK ]   CIRBP [ MEM ]
Gene Expression Viewer (FireBrowse)CIRBP [ Firebrowse - Broad ]
GenevisibleExpression of CIRBP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1153
GTEX Portal (Tissue expression)CIRBP
Human Protein AtlasENSG00000099622-CIRBP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14011   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14011  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14011
PhosPhoSitePlusQ14011
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RBM3/CIRBP_RRM    RRM_dom    RRM_dom_euk   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  RRM_1 (SM00361)  
Conserved Domain (NCBI)CIRBP
PDB (RSDB)1X5S    5TBX   
PDB Europe1X5S    5TBX   
PDB (PDBSum)1X5S    5TBX   
PDB (IMB)1X5S    5TBX   
Structural Biology KnowledgeBase1X5S    5TBX   
SCOP (Structural Classification of Proteins)1X5S    5TBX   
CATH (Classification of proteins structures)1X5S    5TBX   
SuperfamilyQ14011
AlphaFold pdb e-kbQ14011   
Human Protein Atlas [tissue]ENSG00000099622-CIRBP [tissue]
HPRD08375
Protein Interaction databases
DIP (DOE-UCLA)Q14011
IntAct (EBI)Q14011
BioGRIDCIRBP
STRING (EMBL)CIRBP
ZODIACCIRBP
Ontologies - Pathways
QuickGOQ14011
Ontology : AmiGORNA binding  mRNA 3'-UTR binding  protein binding  nucleus  nucleus  nucleus  nucleoplasm  spliceosomal complex  cytoplasm  cytoplasm  response to cold  response to UV  cytoplasmic stress granule  negative regulation of translation  translation repressor activity  stress granule assembly  positive regulation of translation  positive regulation of mRNA splicing, via spliceosome  mRNA stabilization  small ribosomal subunit rRNA binding  
Ontology : EGO-EBIRNA binding  mRNA 3'-UTR binding  protein binding  nucleus  nucleus  nucleus  nucleoplasm  spliceosomal complex  cytoplasm  cytoplasm  response to cold  response to UV  cytoplasmic stress granule  negative regulation of translation  translation repressor activity  stress granule assembly  positive regulation of translation  positive regulation of mRNA splicing, via spliceosome  mRNA stabilization  small ribosomal subunit rRNA binding  
NDEx NetworkCIRBP
Atlas of Cancer Signalling NetworkCIRBP
Wikipedia pathwaysCIRBP
Orthology - Evolution
OrthoDB1153
GeneTree (enSembl)ENSG00000099622
Phylogenetic Trees/Animal Genes : TreeFamCIRBP
Homologs : HomoloGeneCIRBP
Homology/Alignments : Family Browser (UCSC)CIRBP
Gene fusions - Rearrangements
Fusion : MitelmanCIRBP/UGP2 [19p13.3/2p15]  
Fusion : QuiverCIRBP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIRBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIRBP
dbVarCIRBP
ClinVarCIRBP
MonarchCIRBP
1000_GenomesCIRBP 
Exome Variant ServerCIRBP
GNOMAD BrowserENSG00000099622
Varsome BrowserCIRBP
ACMGCIRBP variants
VarityQ14011
Genomic Variants (DGV)CIRBP [DGVbeta]
DECIPHERCIRBP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIRBP 
Mutations
ICGC Data PortalCIRBP 
TCGA Data PortalCIRBP 
Broad Tumor PortalCIRBP
OASIS PortalCIRBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIRBP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCIRBP
Mutations and Diseases : HGMDCIRBP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCIRBP
DgiDB (Drug Gene Interaction Database)CIRBP
DoCM (Curated mutations)CIRBP
CIViC (Clinical Interpretations of Variants in Cancer)CIRBP
Cancer3DCIRBP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602649   
Orphanet
DisGeNETCIRBP
MedgenCIRBP
Genetic Testing Registry CIRBP
NextProtQ14011 [Medical]
GENETestsCIRBP
Target ValidationCIRBP
Huge Navigator CIRBP [HugePedia]
ClinGenCIRBP
Clinical trials, drugs, therapy
MyCancerGenomeCIRBP
Protein Interactions : CTDCIRBP
Pharm GKB GenePA26519
PharosQ14011
Clinical trialCIRBP
Miscellaneous
canSAR (ICR)CIRBP
HarmonizomeCIRBP
DataMed IndexCIRBP
Probes
Litterature
PubMed114 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCIRBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:04:07 CEST 2021

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