Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CISD1 (CDGSH iron sulfur domain 1)

Identity

Alias (NCBI)C10orf70
MDS029
ZCD1
mitoNEET
HGNC (Hugo) CISD1
HGNC Alias symbMDS029
mitoNEET
HGNC Previous nameC10orf70
 ZCD1
HGNC Previous namechromosome 10 open reading frame 70
 zinc finger, CDGSH-type domain 1
LocusID (NCBI) 55847
Atlas_Id 53917
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 58269162 and ends at 58289585 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BICC1 (10q21.1) / CISD1 (10q21.1)CISD1 (10q21.1) / GABRA1 (5q34)IFRD1 (7q31.1) / CISD1 (10q21.1)
CISD1 10q21.1 / GABRA1 5q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)CISD1   30880
Cards
Entrez_Gene (NCBI)CISD1    CDGSH iron sulfur domain 1
AliasesC10orf70; MDS029; ZCD1; mitoNEET
GeneCards (Weizmann)CISD1
Ensembl hg19 (Hinxton)ENSG00000122873 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122873 [Gene_View]  ENSG00000122873 [Sequence]  chr10:58269162-58289585 [Contig_View]  CISD1 [Vega]
ICGC DataPortalENSG00000122873
TCGA cBioPortalCISD1
AceView (NCBI)CISD1
Genatlas (Paris)CISD1
SOURCE (Princeton)CISD1
Genetics Home Reference (NIH)CISD1
Genomic and cartography
GoldenPath hg38 (UCSC)CISD1  -     chr10:58269162-58289585 +  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CISD1  -     10q21.1   [Description]    (hg19-Feb_2009)
GoldenPathCISD1 - 10q21.1 [CytoView hg19]  CISD1 - 10q21.1 [CytoView hg38]
ImmunoBaseENSG00000122873
Genome Data Viewer NCBICISD1 [Mapview hg19]  
OMIM611932   
Gene and transcription
Genbank (Entrez)AF220049 AI025360 AK312017 AY960578 BC005962
RefSeq transcript (Entrez)NM_018464
Consensus coding sequences : CCDS (NCBI)CISD1
Gene ExpressionCISD1 [ NCBI-GEO ]   CISD1 [ EBI - ARRAY_EXPRESS ]   CISD1 [ SEEK ]   CISD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CISD1 [ Firebrowse - Broad ]
GenevisibleExpression of CISD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55847
GTEX Portal (Tissue expression)CISD1
Human Protein AtlasENSG00000122873-CISD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ45
PhosPhoSitePlusQ9NZ45
Domains : Interpro (EBI)FeS-contain_CDGSH-typ    FeS-contain_mitoNEET_C    FeS-contain_mitoNEET_N   
Domain families : Pfam (Sanger)MitoNEET_N (PF10660)    zf-CDGSH (PF09360)   
Domain families : Pfam (NCBI)pfam10660    pfam09360   
Domain families : Smart (EMBL)ZnF_CDGSH (SM00704)  
Conserved Domain (NCBI)CISD1
PDB (RSDB)2QD0    2QH7    2R13    3EW0    3LPQ    3REE    4EZF    4F1E    4F28    4F2C    6DE9   
PDB Europe2QD0    2QH7    2R13    3EW0    3LPQ    3REE    4EZF    4F1E    4F28    4F2C    6DE9   
PDB (PDBSum)2QD0    2QH7    2R13    3EW0    3LPQ    3REE    4EZF    4F1E    4F28    4F2C    6DE9   
PDB (IMB)2QD0    2QH7    2R13    3EW0    3LPQ    3REE    4EZF    4F1E    4F28    4F2C    6DE9   
Structural Biology KnowledgeBase2QD0    2QH7    2R13    3EW0    3LPQ    3REE    4EZF    4F1E    4F28    4F2C    6DE9   
SCOP (Structural Classification of Proteins)2QD0    2QH7    2R13    3EW0    3LPQ    3REE    4EZF    4F1E    4F28    4F2C    6DE9   
CATH (Classification of proteins structures)2QD0    2QH7    2R13    3EW0    3LPQ    3REE    4EZF    4F1E    4F28    4F2C    6DE9   
SuperfamilyQ9NZ45
AlphaFold pdb e-kbQ9NZ45   
Human Protein Atlas [tissue]ENSG00000122873-CISD1 [tissue]
HPRD12587
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ45
IntAct (EBI)Q9NZ45
BioGRIDCISD1
STRING (EMBL)CISD1
ZODIACCISD1
Ontologies - Pathways
QuickGOQ9NZ45
Ontology : AmiGOmitochondrion  mitochondrion  mitochondrion  mitochondrial outer membrane  integral component of membrane  cytoplasmic side of mitochondrial outer membrane  identical protein binding  regulation of cellular respiration  metal ion binding  2 iron, 2 sulfur cluster binding  
Ontology : EGO-EBImitochondrion  mitochondrion  mitochondrion  mitochondrial outer membrane  integral component of membrane  cytoplasmic side of mitochondrial outer membrane  identical protein binding  regulation of cellular respiration  metal ion binding  2 iron, 2 sulfur cluster binding  
NDEx NetworkCISD1
Atlas of Cancer Signalling NetworkCISD1
Wikipedia pathwaysCISD1
Orthology - Evolution
OrthoDB55847
GeneTree (enSembl)ENSG00000122873
Phylogenetic Trees/Animal Genes : TreeFamCISD1
Homologs : HomoloGeneCISD1
Homology/Alignments : Family Browser (UCSC)CISD1
Gene fusions - Rearrangements
Fusion : MitelmanCISD1/GABRA1 [10q21.1/5q34]  
Fusion : QuiverCISD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCISD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CISD1
dbVarCISD1
ClinVarCISD1
MonarchCISD1
1000_GenomesCISD1 
Exome Variant ServerCISD1
GNOMAD BrowserENSG00000122873
Varsome BrowserCISD1
ACMGCISD1 variants
VarityQ9NZ45
Genomic Variants (DGV)CISD1 [DGVbeta]
DECIPHERCISD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCISD1 
Mutations
ICGC Data PortalCISD1 
TCGA Data PortalCISD1 
Broad Tumor PortalCISD1
OASIS PortalCISD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCISD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCISD1
Mutations and Diseases : HGMDCISD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCISD1
DgiDB (Drug Gene Interaction Database)CISD1
DoCM (Curated mutations)CISD1
CIViC (Clinical Interpretations of Variants in Cancer)CISD1
Cancer3DCISD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611932   
Orphanet
DisGeNETCISD1
MedgenCISD1
Genetic Testing Registry CISD1
NextProtQ9NZ45 [Medical]
GENETestsCISD1
Target ValidationCISD1
Huge Navigator CISD1 [HugePedia]
ClinGenCISD1
Clinical trials, drugs, therapy
MyCancerGenomeCISD1
Protein Interactions : CTDCISD1
Pharm GKB GenePA162382289
PharosQ9NZ45
Clinical trialCISD1
Miscellaneous
canSAR (ICR)CISD1
HarmonizomeCISD1
DataMed IndexCISD1
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCISD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:04:07 CEST 2021
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