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CISD2 (CDGSH iron sulfur domain 2)

Identity

Other namesERIS
Miner1
NAF-1
WFS2
ZCD2
HGNC (Hugo) CISD2
LocusID (NCBI) 493856
Location 4q24
Location_base_pair Starts at 103790135 and ends at 103813963 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)CISD2   24212
Cards
Entrez_Gene (NCBI)CISD2  493856  CDGSH iron sulfur domain 2
GeneCards (Weizmann)CISD2
Ensembl hg19 (Hinxton) [Gene_View]  chr4:103790135-103813963 [Contig_View]  CISD2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:103790135-103813963 [Contig_View]  CISD2 [Vega]
cBioPortalCISD2
AceView (NCBI)CISD2
Genatlas (Paris)CISD2
WikiGenes493856
SOURCE (Princeton)CISD2
Genomic and cartography
GoldenPath hg19 (UCSC)CISD2  -     chr4:103790135-103813963 +  4q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CISD2  -     4q24   [Description]    (hg38-Dec_2013)
EnsemblCISD2 - 4q24 [CytoView hg19]  CISD2 - 4q24 [CytoView hg38]
Mapping of homologs : NCBICISD2 [Mapview hg19]  CISD2 [Mapview hg38]
OMIM604928   611507   
Gene and transcription
Genbank (Entrez)AA424361 AI277147 AK292134 AM392809 AM393385
RefSeq transcript (Entrez)NM_001008388
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_008636 NT_016354 NW_001838915 NW_004929320
Consensus coding sequences : CCDS (NCBI)CISD2
Cluster EST : UnigeneHs.745013 [ NCBI ]
CGAP (NCI)Hs.745013
Gene ExpressionCISD2 [ NCBI-GEO ]     CISD2 [ SEEK ]   CISD2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5K1 (Uniprot)
NextProtQ8N5K1  [Medical]
With graphics : InterProQ8N5K1
Splice isoforms : SwissVarQ8N5K1 (Swissvar)
Domains : Interpro (EBI)FeS-contain_CDGSH-typ    FeS-contain_CDGSH-typ_subfam    FeS-contain_mitoNEET_N   
Related proteins : CluSTrQ8N5K1
Domain families : Pfam (Sanger)MitoNEET_N (PF10660)    zf-CDGSH (PF09360)   
Domain families : Pfam (NCBI)pfam10660    pfam09360   
Domain families : Smart (EMBL)ZnF_CDGSH (SM00704)  
DMDM Disease mutations493856
Blocks (Seattle)Q8N5K1
PDB (SRS)3FNV   
PDB (PDBSum)3FNV   
PDB (IMB)3FNV   
PDB (RSDB)3FNV   
Peptide AtlasQ8N5K1
HPRD17413
IPIIPI00166865   IPI00964125   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5K1
IntAct (EBI)Q8N5K1
BioGRIDCISD2
IntegromeDBCISD2
STRING (EMBL)CISD2
Ontologies - Pathways
QuickGOQ8N5K1
Ontology : AmiGOmitochondrion degradation  protein binding  mitochondrial outer membrane  endoplasmic reticulum  endoplasmic reticulum membrane  multicellular organismal aging  regulation of autophagy  membrane  integral component of membrane  protein homodimerization activity  protein complex  poly(A) RNA binding  metal ion binding  2 iron, 2 sulfur cluster binding  
Ontology : EGO-EBImitochondrion degradation  protein binding  mitochondrial outer membrane  endoplasmic reticulum  endoplasmic reticulum membrane  multicellular organismal aging  regulation of autophagy  membrane  integral component of membrane  protein homodimerization activity  protein complex  poly(A) RNA binding  metal ion binding  2 iron, 2 sulfur cluster binding  
Protein Interaction DatabaseCISD2
DoCM (Curated mutations)CISD2
Wikipedia pathwaysCISD2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCISD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CISD2
dbVarCISD2
ClinVarCISD2
1000_GenomesCISD2 
Exome Variant ServerCISD2
SNP (GeneSNP Utah)CISD2
SNP : HGBaseCISD2
Genetic variants : HAPMAPCISD2
Genomic VariantsCISD2  CISD2 [DGVbeta]
Mutations
Somatic Mutations in Cancer : COSMICCISD2 
CONAN: Copy Number AnalysisCISD2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)EURO-WABB PROJECT OPEN VARIATION DATABASE
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:103790135-103813963
Mutations and Diseases : HGMDCISD2
OMIM604928    611507   
MedgenCISD2
NextProtQ8N5K1 [Medical]
GENETestsCISD2
Disease Genetic AssociationCISD2
Huge Navigator CISD2 [HugePedia]  CISD2 [HugeCancerGEM]
snp3D : Map Gene to Disease493856
DGIdb (Drug Gene Interaction db)CISD2
General knowledge
Homologs : HomoloGeneCISD2
Homology/Alignments : Family Browser (UCSC)CISD2
Phylogenetic Trees/Animal Genes : TreeFamCISD2
Chemical/Protein Interactions : CTD493856
Chemical/Pharm GKB GenePA162382300
Clinical trialCISD2
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
CoreMineCISD2
GoPubMedCISD2
iHOPCISD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:51:29 CET 2014

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