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CISD2 (CDGSH iron sulfur domain 2)

Identity

Other namesERIS
Miner1
NAF-1
WFS2
ZCD2
HGNC (Hugo) CISD2
LocusID (NCBI) 493856
Atlas_Id 53644
Location 4q24
Location_base_pair Starts at 103790135 and ends at 103813963 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
KCNJ10 1q23.2 / CISD2 4q24

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CISD2   24212
Cards
Entrez_Gene (NCBI)CISD2  493856  CDGSH iron sulfur domain 2
GeneCards (Weizmann)CISD2
Ensembl hg19 (Hinxton) [Gene_View]  chr4:103790135-103813963 [Contig_View]  CISD2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:103790135-103813963 [Contig_View]  CISD2 [Vega]
TCGA cBioPortalCISD2
AceView (NCBI)CISD2
Genatlas (Paris)CISD2
WikiGenes493856
SOURCE (Princeton)CISD2
Genomic and cartography
GoldenPath hg19 (UCSC)CISD2  -     chr4:103790135-103813963 +  4q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CISD2  -     4q24   [Description]    (hg38-Dec_2013)
EnsemblCISD2 - 4q24 [CytoView hg19]  CISD2 - 4q24 [CytoView hg38]
Mapping of homologs : NCBICISD2 [Mapview hg19]  CISD2 [Mapview hg38]
OMIM604928   611507   
Gene and transcription
Genbank (Entrez)AA424361 AI277147 AK292134 AM392809 AM393385
RefSeq transcript (Entrez)NM_001008388
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_008636 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)CISD2
Cluster EST : UnigeneHs.745013 [ NCBI ]
CGAP (NCI)Hs.745013
Gene ExpressionCISD2 [ NCBI-GEO ]     CISD2 [ SEEK ]   CISD2 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)493856
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5K1 (Uniprot)
NextProtQ8N5K1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5K1
Splice isoforms : SwissVarQ8N5K1 (Swissvar)
PhosPhoSitePlusQ8N5K1
Domains : Interpro (EBI)FeS-contain_CDGSH-typ    FeS-contain_CDGSH-typ_subfam    FeS-contain_mitoNEET_N   
Domain families : Pfam (Sanger)MitoNEET_N (PF10660)    zf-CDGSH (PF09360)   
Domain families : Pfam (NCBI)pfam10660    pfam09360   
Domain families : Smart (EMBL)ZnF_CDGSH (SM00704)  
DMDM Disease mutations493856
Blocks (Seattle)CISD2
PDB (SRS)3FNV    4OO7    4OOA   
PDB (PDBSum)3FNV    4OO7    4OOA   
PDB (IMB)3FNV    4OO7    4OOA   
PDB (RSDB)3FNV    4OO7    4OOA   
Structural Biology KnowledgeBase3FNV    4OO7    4OOA   
SCOP (Structural Classification of Proteins)3FNV    4OO7    4OOA   
CATH (Classification of proteins structures)3FNV    4OO7    4OOA   
Peptide AtlasQ8N5K1
HPRD17413
IPIIPI00166865   IPI00964125   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5K1
IntAct (EBI)Q8N5K1
BioGRIDCISD2
IntegromeDBCISD2
STRING (EMBL)CISD2
ZODIACCISD2
Ontologies - Pathways
QuickGOQ8N5K1
Ontology : AmiGOmitophagy  protein binding  mitochondrial outer membrane  endoplasmic reticulum  endoplasmic reticulum membrane  multicellular organismal aging  regulation of autophagy  membrane  integral component of membrane  protein homodimerization activity  protein complex  poly(A) RNA binding  metal ion binding  2 iron, 2 sulfur cluster binding  
Ontology : EGO-EBImitophagy  protein binding  mitochondrial outer membrane  endoplasmic reticulum  endoplasmic reticulum membrane  multicellular organismal aging  regulation of autophagy  membrane  integral component of membrane  protein homodimerization activity  protein complex  poly(A) RNA binding  metal ion binding  2 iron, 2 sulfur cluster binding  
Protein Interaction DatabaseCISD2
Atlas of Cancer Signalling NetworkCISD2
Wikipedia pathwaysCISD2
Orthology - Evolution
OrthoDB493856
Phylogenetic Trees/Animal Genes : TreeFamCISD2
Homologs : HomoloGeneCISD2
Homology/Alignments : Family Browser (UCSC)CISD2
Gene fusions - Rearrangements
Fusion: TCGAKCNJ10 1q23.2 CISD2 4q24 LGG
Polymorphisms : SNP, variants
NCBI Variation ViewerCISD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CISD2
dbVarCISD2
ClinVarCISD2
1000_GenomesCISD2 
Exome Variant ServerCISD2
SNP (GeneSNP Utah)CISD2
SNP : HGBaseCISD2
Genetic variants : HAPMAPCISD2
Genomic Variants (DGV)CISD2 [DGVbeta]
Mutations
ICGC Data PortalCISD2 
TCGA Data PortalCISD2 
Tumor PortalCISD2
TCGA Copy Number PortalCISD2
Somatic Mutations in Cancer : COSMICCISD2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)EURO-WABB PROJECT OPEN VARIATION DATABASE
BioMutasearch CISD2
DgiDB (Drug Gene Interaction Database)CISD2
DoCM (Curated mutations)CISD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CISD2 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:103790135-103813963
CONAN: Copy Number AnalysisCISD2 
Mutations and Diseases : HGMDCISD2
OMIM604928    611507   
MedgenCISD2
NextProtQ8N5K1 [Medical]
TSGene493856
GENETestsCISD2
Huge Navigator CISD2 [HugePedia]  CISD2 [HugeCancerGEM]
snp3D : Map Gene to Disease493856
BioCentury BCIQCISD2
General knowledge
Chemical/Protein Interactions : CTD493856
Chemical/Pharm GKB GenePA162382300
Clinical trialCISD2
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCISD2
GoPubMedCISD2
iHOPCISD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:21:21 CET 2016

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