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CISD3 (CDGSH iron sulfur domain 3)

Identity

Alias_symbol (synonym)Miner2
Other alias
HGNC (Hugo) CISD3
LocusID (NCBI) 284106
Atlas_Id 61839
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36886510 and ends at 36891858 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ELL (19p13.11) / CISD3 (17q12)MLLT3 (9p21.3) / CISD3 (17q12)MLLT3 CISD3
ELL CISD3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CISD3   27578
Cards
Entrez_Gene (NCBI)CISD3  284106  CDGSH iron sulfur domain 3
AliasesMiner2
GeneCards (Weizmann)CISD3
Ensembl hg19 (Hinxton) [Gene_View]  chr17:36886510-36891858 [Contig_View]  CISD3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:36886510-36891858 [Contig_View]  CISD3 [Vega]
TCGA cBioPortalCISD3
AceView (NCBI)CISD3
Genatlas (Paris)CISD3
WikiGenes284106
SOURCE (Princeton)CISD3
Genetics Home Reference (NIH)CISD3
Genomic and cartography
GoldenPath hg19 (UCSC)CISD3  -     chr17:36886510-36891858 +  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CISD3  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblCISD3 - 17q12 [CytoView hg19]  CISD3 - 17q12 [CytoView hg38]
Mapping of homologs : NCBICISD3 [Mapview hg19]  CISD3 [Mapview hg38]
OMIM611933   
Gene and transcription
Genbank (Entrez)AK097047 AK098433 BC062294
RefSeq transcript (Entrez)NM_001136498
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NT_187614 NW_004929407
Consensus coding sequences : CCDS (NCBI)CISD3
Cluster EST : UnigeneHs.713595 [ NCBI ]
CGAP (NCI)Hs.713595
Gene ExpressionCISD3 [ NCBI-GEO ]   CISD3 [ EBI - ARRAY_EXPRESS ]   CISD3 [ SEEK ]   CISD3 [ MEM ]
Gene Expression Viewer (FireBrowse)CISD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284106
GTEX Portal (Tissue expression)CISD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7P0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7P0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7P0
Splice isoforms : SwissVarP0C7P0
PhosPhoSitePlusP0C7P0
Domains : Interpro (EBI)FeS-contain_CDGSH-typ    FeS-contain_CDGSH-typ_subfam   
Domain families : Pfam (Sanger)zf-CDGSH (PF09360)   
Domain families : Pfam (NCBI)pfam09360   
Domain families : Smart (EMBL)ZnF_CDGSH (SM00704)  
Conserved Domain (NCBI)CISD3
DMDM Disease mutations284106
Blocks (Seattle)CISD3
SuperfamilyP0C7P0
Peptide AtlasP0C7P0
IPIIPI00783359   
Protein Interaction databases
DIP (DOE-UCLA)P0C7P0
IntAct (EBI)P0C7P0
BioGRIDCISD3
STRING (EMBL)CISD3
ZODIACCISD3
Ontologies - Pathways
QuickGOP0C7P0
Ontology : AmiGOmitochondrion  metal ion binding  2 iron, 2 sulfur cluster binding  
Ontology : EGO-EBImitochondrion  metal ion binding  2 iron, 2 sulfur cluster binding  
NDEx NetworkCISD3
Atlas of Cancer Signalling NetworkCISD3
Wikipedia pathwaysCISD3
Orthology - Evolution
OrthoDB284106
Phylogenetic Trees/Animal Genes : TreeFamCISD3
HOVERGENP0C7P0
HOGENOMP0C7P0
Homologs : HomoloGeneCISD3
Homology/Alignments : Family Browser (UCSC)CISD3
Gene fusions - Rearrangements
Fusion: TCGAMLLT3 CISD3
Fusion: TCGAELL CISD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCISD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CISD3
dbVarCISD3
ClinVarCISD3
1000_GenomesCISD3 
Exome Variant ServerCISD3
ExAC (Exome Aggregation Consortium)CISD3 (select the gene name)
Genetic variants : HAPMAP284106
Genomic Variants (DGV)CISD3 [DGVbeta]
DECIPHER (Syndromes)17:36886510-36891858  
CONAN: Copy Number AnalysisCISD3 
Mutations
ICGC Data PortalCISD3 
TCGA Data PortalCISD3 
Broad Tumor PortalCISD3
OASIS PortalCISD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCISD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCISD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CISD3
DgiDB (Drug Gene Interaction Database)CISD3
DoCM (Curated mutations)CISD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CISD3 (select a term)
intoGenCISD3
Cancer3DCISD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611933   
Orphanet
MedgenCISD3
Genetic Testing Registry CISD3
NextProtP0C7P0 [Medical]
TSGene284106
GENETestsCISD3
Huge Navigator CISD3 [HugePedia]
snp3D : Map Gene to Disease284106
BioCentury BCIQCISD3
ClinGenCISD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284106
Chemical/Pharm GKB GenePA162382311
Clinical trialCISD3
Miscellaneous
canSAR (ICR)CISD3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCISD3
EVEXCISD3
GoPubMedCISD3
iHOPCISD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:32 CET 2017

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