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CISD3 (CDGSH iron sulfur domain 3)

Identity

Alias (NCBI)MiNT
Miner2
HGNC (Hugo) CISD3
HGNC Alias symbMiner2
HGNC Alias namemitoNEET related 2
LocusID (NCBI) 284106
Atlas_Id 61839
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 38730257 and ends at 38735605 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ELL (19p13.11) / CISD3 (17q12)MLLT3 (9p21.3) / CISD3 (17q12)MLLT3 CISD3
ELL CISD3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(9;17)(p21;q12) MLLT3/CISD3
t(17;19)(q12;p13) ELL/CISD3


External links

Nomenclature
HGNC (Hugo)CISD3   27578
Cards
Entrez_Gene (NCBI)CISD3  284106  CDGSH iron sulfur domain 3
AliasesMiNT; Miner2
GeneCards (Weizmann)CISD3
Ensembl hg19 (Hinxton)ENSG00000277972 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277972 [Gene_View]  ENSG00000277972 [Sequence]  chr17:38730257-38735605 [Contig_View]  CISD3 [Vega]
ICGC DataPortalENSG00000277972
TCGA cBioPortalCISD3
AceView (NCBI)CISD3
Genatlas (Paris)CISD3
WikiGenes284106
SOURCE (Princeton)CISD3
Genetics Home Reference (NIH)CISD3
Genomic and cartography
GoldenPath hg38 (UCSC)CISD3  -     chr17:38730257-38735605 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CISD3  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathCISD3 - 17q12 [CytoView hg19]  CISD3 - 17q12 [CytoView hg38]
ImmunoBaseENSG00000277972
genome Data Viewer NCBICISD3 [Mapview hg19]  
OMIM611933   
Gene and transcription
Genbank (Entrez)AK097047 AK098433 BC062294
RefSeq transcript (Entrez)NM_001136498
RefSeq genomic (Entrez)NC_000017 NT_187614
Consensus coding sequences : CCDS (NCBI)CISD3
Alternative Splicing GalleryENSG00000277972
Gene ExpressionCISD3 [ NCBI-GEO ]   CISD3 [ EBI - ARRAY_EXPRESS ]   CISD3 [ SEEK ]   CISD3 [ MEM ]
Gene Expression Viewer (FireBrowse)CISD3 [ Firebrowse - Broad ]
GenevisibleExpression of CISD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284106
GTEX Portal (Tissue expression)CISD3
Human Protein AtlasENSG00000277972-CISD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7P0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7P0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7P0
Splice isoforms : SwissVarP0C7P0
PhosPhoSitePlusP0C7P0
Domains : Interpro (EBI)FeS-contain_CDGSH-typ    FeS-contain_mitoNEET_C   
Domain families : Pfam (Sanger)zf-CDGSH (PF09360)   
Domain families : Pfam (NCBI)pfam09360   
Domain families : Smart (EMBL)ZnF_CDGSH (SM00704)  
Conserved Domain (NCBI)CISD3
DMDM Disease mutations284106
Blocks (Seattle)CISD3
PDB (RSDB)6AVJ   
PDB Europe6AVJ   
PDB (PDBSum)6AVJ   
PDB (IMB)6AVJ   
Structural Biology KnowledgeBase6AVJ   
SCOP (Structural Classification of Proteins)6AVJ   
CATH (Classification of proteins structures)6AVJ   
SuperfamilyP0C7P0
Human Protein Atlas [tissue]ENSG00000277972-CISD3 [tissue]
Peptide AtlasP0C7P0
IPIIPI00783359   
Protein Interaction databases
DIP (DOE-UCLA)P0C7P0
IntAct (EBI)P0C7P0
FunCoupENSG00000277972
BioGRIDCISD3
STRING (EMBL)CISD3
ZODIACCISD3
Ontologies - Pathways
QuickGOP0C7P0
Ontology : AmiGOmitochondrion  metal ion binding  2 iron, 2 sulfur cluster binding  protein maturation by [2Fe-2S] cluster transfer  
Ontology : EGO-EBImitochondrion  metal ion binding  2 iron, 2 sulfur cluster binding  protein maturation by [2Fe-2S] cluster transfer  
NDEx NetworkCISD3
Atlas of Cancer Signalling NetworkCISD3
Wikipedia pathwaysCISD3
Orthology - Evolution
OrthoDB284106
GeneTree (enSembl)ENSG00000277972
Phylogenetic Trees/Animal Genes : TreeFamCISD3
HOGENOMP0C7P0
Homologs : HomoloGeneCISD3
Homology/Alignments : Family Browser (UCSC)CISD3
Gene fusions - Rearrangements
Fusion PortalMLLT3 CISD3
Fusion PortalELL CISD3
Fusion : QuiverCISD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCISD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CISD3
dbVarCISD3
ClinVarCISD3
1000_GenomesCISD3 
Exome Variant ServerCISD3
GNOMAD BrowserENSG00000277972
Varsome BrowserCISD3
Genetic variants : HAPMAP284106
Genomic Variants (DGV)CISD3 [DGVbeta]
DECIPHERCISD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCISD3 
Mutations
ICGC Data PortalCISD3 
TCGA Data PortalCISD3 
Broad Tumor PortalCISD3
OASIS PortalCISD3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCISD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CISD3
DgiDB (Drug Gene Interaction Database)CISD3
DoCM (Curated mutations)CISD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CISD3 (select a term)
intoGenCISD3
Cancer3DCISD3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611933   
Orphanet
DisGeNETCISD3
MedgenCISD3
Genetic Testing Registry CISD3
NextProtP0C7P0 [Medical]
TSGene284106
GENETestsCISD3
Target ValidationCISD3
Huge Navigator CISD3 [HugePedia]
snp3D : Map Gene to Disease284106
BioCentury BCIQCISD3
ClinGenCISD3
Clinical trials, drugs, therapy
Protein Interactions : CTD284106
Pharm GKB GenePA162382311
Clinical trialCISD3
Miscellaneous
canSAR (ICR)CISD3 (select the gene name)
HarmonizomeCISD3
DataMed IndexCISD3
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCISD3
EVEXCISD3
GoPubMedCISD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 15:51:39 CEST 2020

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