Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CITED1 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1)

Identity

Alias_namesMSG1
Cbp/p300-interacting transactivator
Other alias
HGNC (Hugo) CITED1
LocusID (NCBI) 4435
Atlas_Id 40086
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 71521488 and ends at 71525764 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HDAC8 (Xq13.1) / CITED1 (Xq13.1)RPL38 (17q25.1) / CITED1 (Xq13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CITED1   1986
Cards
Entrez_Gene (NCBI)CITED1  4435  Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1
AliasesMSG1
GeneCards (Weizmann)CITED1
Ensembl hg19 (Hinxton)ENSG00000125931 [Gene_View]  chrX:71521488-71525764 [Contig_View]  CITED1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125931 [Gene_View]  chrX:71521488-71525764 [Contig_View]  CITED1 [Vega]
ICGC DataPortalENSG00000125931
TCGA cBioPortalCITED1
AceView (NCBI)CITED1
Genatlas (Paris)CITED1
WikiGenes4435
SOURCE (Princeton)CITED1
Genetics Home Reference (NIH)CITED1
Genomic and cartography
GoldenPath hg19 (UCSC)CITED1  -     chrX:71521488-71525764 -  Xq13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CITED1  -     Xq13.1   [Description]    (hg38-Dec_2013)
EnsemblCITED1 - Xq13.1 [CytoView hg19]  CITED1 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBICITED1 [Mapview hg19]  CITED1 [Mapview hg38]
OMIM300149   
Gene and transcription
Genbank (Entrez)AB451286 AB451418 AI217516 BC004240 BP247232
RefSeq transcript (Entrez)NM_001144885 NM_001144886 NM_001144887 NM_004143
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_015847 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)CITED1
Cluster EST : UnigeneHs.40403 [ NCBI ]
CGAP (NCI)Hs.40403
Alternative Splicing GalleryENSG00000125931
Gene ExpressionCITED1 [ NCBI-GEO ]   CITED1 [ EBI - ARRAY_EXPRESS ]   CITED1 [ SEEK ]   CITED1 [ MEM ]
Gene Expression Viewer (FireBrowse)CITED1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4435
GTEX Portal (Tissue expression)CITED1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99966   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99966  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99966
Splice isoforms : SwissVarQ99966
PhosPhoSitePlusQ99966
Domains : Interpro (EBI)CITED   
Domain families : Pfam (Sanger)CITED (PF04487)   
Domain families : Pfam (NCBI)pfam04487   
Conserved Domain (NCBI)CITED1
DMDM Disease mutations4435
Blocks (Seattle)CITED1
SuperfamilyQ99966
Human Protein AtlasENSG00000125931
Peptide AtlasQ99966
HPRD02146
IPIIPI00019174   IPI00920996   IPI00642974   IPI00640069   IPI00640581   IPI00641263   IPI00641821   
Protein Interaction databases
DIP (DOE-UCLA)Q99966
IntAct (EBI)Q99966
FunCoupENSG00000125931
BioGRIDCITED1
STRING (EMBL)CITED1
ZODIACCITED1
Ontologies - Pathways
QuickGOQ99966
Ontology : AmiGOembryonic axis specification  RNA polymerase II transcription coactivator activity  vasculogenesis  metanephros development  branching involved in ureteric bud morphogenesis  placenta development  negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  protein binding  nucleus  cytoplasm  cytosol  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  nucleocytoplasmic transport  apoptotic process  transforming growth factor beta receptor signaling pathway  brain development  protein C-terminus binding  cell proliferation  positive regulation of gene expression  negative regulation of Wnt signaling pathway  melanocyte differentiation  positive regulation of transforming growth factor beta receptor signaling pathway  response to lipopolysaccharide  response to insulin  response to cytokine  response to interferon-gamma  melanin biosynthetic process  protein homodimerization activity  pigmentation  negative regulation of neuron apoptotic process  response to estrogen  response to estrogen  transcription regulatory region DNA binding  negative regulation of osteoblast differentiation  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  LBD domain binding  response to cAMP  mesenchymal to epithelial transition  SMAD protein signal transduction  labyrinthine layer development  spongiotrophoblast layer development  co-SMAD binding  response to interleukin-1  response to interleukin-2  response to interleukin-4  response to interleukin-6  response to interleukin-9  response to interleukin-11  response to parathyroid hormone  response to transforming growth factor beta  
Ontology : EGO-EBIembryonic axis specification  RNA polymerase II transcription coactivator activity  vasculogenesis  metanephros development  branching involved in ureteric bud morphogenesis  placenta development  negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  chromatin binding  transcription factor activity, sequence-specific DNA binding  transcription coactivator activity  protein binding  nucleus  cytoplasm  cytosol  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  nucleocytoplasmic transport  apoptotic process  transforming growth factor beta receptor signaling pathway  brain development  protein C-terminus binding  cell proliferation  positive regulation of gene expression  negative regulation of Wnt signaling pathway  melanocyte differentiation  positive regulation of transforming growth factor beta receptor signaling pathway  response to lipopolysaccharide  response to insulin  response to cytokine  response to interferon-gamma  melanin biosynthetic process  protein homodimerization activity  pigmentation  negative regulation of neuron apoptotic process  response to estrogen  response to estrogen  transcription regulatory region DNA binding  negative regulation of osteoblast differentiation  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  LBD domain binding  response to cAMP  mesenchymal to epithelial transition  SMAD protein signal transduction  labyrinthine layer development  spongiotrophoblast layer development  co-SMAD binding  response to interleukin-1  response to interleukin-2  response to interleukin-4  response to interleukin-6  response to interleukin-9  response to interleukin-11  response to parathyroid hormone  response to transforming growth factor beta  
NDEx NetworkCITED1
Atlas of Cancer Signalling NetworkCITED1
Wikipedia pathwaysCITED1
Orthology - Evolution
OrthoDB4435
GeneTree (enSembl)ENSG00000125931
Phylogenetic Trees/Animal Genes : TreeFamCITED1
HOVERGENQ99966
HOGENOMQ99966
Homologs : HomoloGeneCITED1
Homology/Alignments : Family Browser (UCSC)CITED1
Gene fusions - Rearrangements
Fusion : MitelmanHDAC8/CITED1 [Xq13.1/Xq13.1]  [t(X;X)(q13;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCITED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CITED1
dbVarCITED1
ClinVarCITED1
1000_GenomesCITED1 
Exome Variant ServerCITED1
ExAC (Exome Aggregation Consortium)CITED1 (select the gene name)
Genetic variants : HAPMAP4435
Genomic Variants (DGV)CITED1 [DGVbeta]
DECIPHER (Syndromes)X:71521488-71525764  ENSG00000125931
CONAN: Copy Number AnalysisCITED1 
Mutations
ICGC Data PortalCITED1 
TCGA Data PortalCITED1 
Broad Tumor PortalCITED1
OASIS PortalCITED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCITED1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCITED1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CITED1
DgiDB (Drug Gene Interaction Database)CITED1
DoCM (Curated mutations)CITED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CITED1 (select a term)
intoGenCITED1
Cancer3DCITED1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300149   
Orphanet
MedgenCITED1
Genetic Testing Registry CITED1
NextProtQ99966 [Medical]
TSGene4435
GENETestsCITED1
Huge Navigator CITED1 [HugePedia]
snp3D : Map Gene to Disease4435
BioCentury BCIQCITED1
ClinGenCITED1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4435
Chemical/Pharm GKB GenePA26523
Clinical trialCITED1
Miscellaneous
canSAR (ICR)CITED1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCITED1
EVEXCITED1
GoPubMedCITED1
iHOPCITED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:56:41 CEST 2017

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