Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CIZ1 (CDKN1A interacting zinc finger protein 1)

Identity

Other namesLSFR1
NP94
ZNF356
HGNC (Hugo) CIZ1
LocusID (NCBI) 25792
Location 9q34.11
Location_base_pair Starts at 130928344 and ends at 130966662 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CIZ1   16744
Entrez_Gene (NCBI)CIZ1  25792  CDKN1A interacting zinc finger protein 1
Cards
GeneCards (Weizmann)CIZ1
Ensembl (Hinxton)ENSG00000148337 [Gene_View]  chr9:130928344-130966662 [Contig_View]  CIZ1 [Vega]
AceView (NCBI)CIZ1
Genatlas (Paris)CIZ1
SOURCE (Stanford)NM_001131015 NM_001131016 NM_001131017 NM_001131018 NM_001257975 NM_001257976 NM_012127
Genomic and cartography
GoldenPath (UCSC)CIZ1  -  9q34.11   chr9:130928344-130966662 -  9q34.11   [Description]    (hg19-Feb_2009)
EnsemblCIZ1 - 9q34.11 [CytoView]
Mapping of homologs : NCBICIZ1 [Mapview]
OMIM611420   
Gene and transcription
Genbank (Entrez)AB030835 AF159025 AF234161 AK023978 AK027287
RefSeq transcript (SRS)NM_001131015 NM_001131016 NM_001131017 NM_001131018 NM_001257975 NM_001257976 NM_012127
RefSeq transcript (Entrez)NM_001131015 NM_001131016 NM_001131017 NM_001131018 NM_001257975 NM_001257976 NM_012127
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NG_032983 NT_008470 NW_001839239 NW_004078058
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_032983 NT_008470 NW_001839239 NW_004078058
Consensus coding sequences : CCDS (NCBI)CIZ1
Cluster EST : UnigeneHs.212395 [ SRS ] Hs.212395 [ NCBI ]
CGAP (NCI)Hs.212395
Alternative Splicing : Fast-db (Paris)GSHG0031186
Alternative Splicing GalleryENSG00000148337
Gene ExpressionCIZ1 [ NCBI-GEO ]   CIZ1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULV3 (SRS) Q9ULV3 (Uniprot)
NextProtQ9ULV3
With graphics : InterProQ9ULV3
Splice isoforms : SwissVarQ9ULV3(Swissvar)
Domaine pattern : Prosite (SRS)ZF_MATRIN (PS50171)    ZINC_FINGER_C2H2_1 (PS00028)   
Domaine pattern : Prosite (Expaxy)ZF_MATRIN (PS50171)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (SRS)CIZ1    Znf_C2H2    Znf_C2H2-like    Znf_C2H2_jaz    Znf_C2H2_matrin    Znf_U1   
Domains : Interpro (EBI)CIZ1    Znf_C2H2    Znf_C2H2-like    Znf_C2H2_jaz    Znf_C2H2_matrin    Znf_U1   
Related proteins : CluSTrQ9ULV3
Domain families : Pfam (SRS)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (Sanger)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12171   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
DMDM25792
Blocks (Seattle)Q9ULV3
Human Protein AtlasENSG00000148337
HPRD13061
IPIIPI00329602   IPI00220051   IPI00551026   IPI00183425   IPI01013233   IPI00921819   IPI01014151   IPI00647476   IPI00064534   IPI00386740   IPI00639845   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULV3
IntAct (EBI)Q9ULV3
FunCoupENSG00000148337
REACTOMECIZ1
Protein Interaction Database25792
BioGRIDCIZ1
InParanoidQ9ULV3
Interologous Interaction database Q9ULV3
IntegromeDBCIZ1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CIZ1
SNP (GeneSNP Utah)CIZ1
SNP : HGBaseCIZ1
Genetic variants : HAPMAPCIZ1
Somatic Mutations in Cancer : COSMICCIZ1 
CONAN: Copy Number AnalysisCIZ1 
Mutations and Diseases : HGMDCIZ1
OMIM611420   
GENETests611420   
Disease Genetic AssociationCIZ1
Huge Navigator CIZ1 [HugePedia]  CIZ1 [HugeCancerGEM]
Genomic VariantsCIZ1  CIZ1 [DGVbeta]
snp3D : Map Gene to Disease25792
General knowledge
Homologs : HomoloGeneCIZ1
Homology/Alignments : Family Browser (UCSC)CIZ1
Phylogenetic Trees/Animal Genes : TreeFamCIZ1
Chemical/Protein Interactions : CTD25792
Chemical/Pharm GKB GenePA134883336
Clinical trialCIZ1
Cancer Resource (Charite)ENSG00000148337
Ontology : AmiGOnucleic acid binding  protein binding  nucleus  zinc ion binding  cyclin binding  positive regulation of DNA-dependent DNA replication initiation  metal ion binding  maintenance of nucleus location  
Ontology : EGO-EBInucleic acid binding  protein binding  nucleus  zinc ion binding  cyclin binding  positive regulation of DNA-dependent DNA replication initiation  metal ion binding  maintenance of nucleus location  
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGeneCIZ1
iHOPCIZ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:36:46 CEST 2013
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