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CIZ1 (CDKN1A interacting zinc finger protein 1)

Identity

Alias_symbol (synonym)LSFR1
ZNF356
Other aliasNP94
HGNC (Hugo) CIZ1
LocusID (NCBI) 25792
Atlas_Id 46240
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 130928344 and ends at 130966662 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CIZ1 (9q34.11) / ARID1A (1p36.11)CIZ1 (9q34.11) / CIZ1 (9q34.11)CIZ1 (9q34.11) / COL3A1 (2q32.2)
CIZ1 (9q34.11) / LCN2 (9q34.11)CIZ1 (9q34.11) / MANBAL (20q11.23)CIZ1 (9q34.11) / SPTAN1 (9q34.11)
FAM102A (9q34.11) / CIZ1 (9q34.11)MLF1 (3q25.32) / CIZ1 (9q34.11)SLC25A25 (9q34.11) / CIZ1 (9q34.11)
SLC25A25 9q34.11 / CIZ1 9q34.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CIZ1   16744
Cards
Entrez_Gene (NCBI)CIZ1  25792  CDKN1A interacting zinc finger protein 1
AliasesLSFR1; NP94; ZNF356
GeneCards (Weizmann)CIZ1
Ensembl hg19 (Hinxton)ENSG00000148337 [Gene_View]  chr9:130928344-130966662 [Contig_View]  CIZ1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148337 [Gene_View]  chr9:130928344-130966662 [Contig_View]  CIZ1 [Vega]
ICGC DataPortalENSG00000148337
TCGA cBioPortalCIZ1
AceView (NCBI)CIZ1
Genatlas (Paris)CIZ1
WikiGenes25792
SOURCE (Princeton)CIZ1
Genetics Home Reference (NIH)CIZ1
Genomic and cartography
GoldenPath hg19 (UCSC)CIZ1  -     chr9:130928344-130966662 -  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CIZ1  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblCIZ1 - 9q34.11 [CytoView hg19]  CIZ1 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBICIZ1 [Mapview hg19]  CIZ1 [Mapview hg38]
OMIM611420   
Gene and transcription
Genbank (Entrez)AB030835 AF159025 AF234161 AK023978 AK027287
RefSeq transcript (Entrez)NM_001131015 NM_001131016 NM_001131017 NM_001131018 NM_001257975 NM_001257976 NM_012127
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_032983 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)CIZ1
Cluster EST : UnigeneHs.212395 [ NCBI ]
CGAP (NCI)Hs.212395
Alternative Splicing GalleryENSG00000148337
Gene ExpressionCIZ1 [ NCBI-GEO ]   CIZ1 [ EBI - ARRAY_EXPRESS ]   CIZ1 [ SEEK ]   CIZ1 [ MEM ]
Gene Expression Viewer (FireBrowse)CIZ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25792
GTEX Portal (Tissue expression)CIZ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULV3
Splice isoforms : SwissVarQ9ULV3
PhosPhoSitePlusQ9ULV3
Domaine pattern : Prosite (Expaxy)ZF_MATRIN (PS50171)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)CIZ1    Znf_C2H2    Znf_C2H2-like    Znf_C2H2_jaz    Znf_C2H2_matrin    Znf_U1   
Domain families : Pfam (Sanger)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12171   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)CIZ1
DMDM Disease mutations25792
Blocks (Seattle)CIZ1
SuperfamilyQ9ULV3
Human Protein AtlasENSG00000148337
Peptide AtlasQ9ULV3
HPRD13061
IPIIPI00329602   IPI00220051   IPI00551026   IPI00183425   IPI01013233   IPI00921819   IPI01014151   IPI00647476   IPI00064534   IPI00386740   IPI00639845   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULV3
IntAct (EBI)Q9ULV3
FunCoupENSG00000148337
BioGRIDCIZ1
STRING (EMBL)CIZ1
ZODIACCIZ1
Ontologies - Pathways
QuickGOQ9ULV3
Ontology : AmiGOnucleic acid binding  protein binding  nucleus  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  protein binding  nucleus  zinc ion binding  
NDEx NetworkCIZ1
Atlas of Cancer Signalling NetworkCIZ1
Wikipedia pathwaysCIZ1
Orthology - Evolution
OrthoDB25792
GeneTree (enSembl)ENSG00000148337
Phylogenetic Trees/Animal Genes : TreeFamCIZ1
HOVERGENQ9ULV3
HOGENOMQ9ULV3
Homologs : HomoloGeneCIZ1
Homology/Alignments : Family Browser (UCSC)CIZ1
Gene fusions - Rearrangements
Fusion : MitelmanFAM102A/CIZ1 [9q34.11/9q34.11]  [t(9;9)(q34;q34)]  
Fusion : MitelmanSLC25A25/CIZ1 [9q34.11/9q34.11]  [t(9;9)(q34;q34)]  
Fusion: TCGASLC25A25 9q34.11 CIZ1 9q34.11 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIZ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIZ1
dbVarCIZ1
ClinVarCIZ1
1000_GenomesCIZ1 
Exome Variant ServerCIZ1
ExAC (Exome Aggregation Consortium)CIZ1 (select the gene name)
Genetic variants : HAPMAP25792
Genomic Variants (DGV)CIZ1 [DGVbeta]
DECIPHER (Syndromes)9:130928344-130966662  ENSG00000148337
CONAN: Copy Number AnalysisCIZ1 
Mutations
ICGC Data PortalCIZ1 
TCGA Data PortalCIZ1 
Broad Tumor PortalCIZ1
OASIS PortalCIZ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIZ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCIZ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CIZ1
DgiDB (Drug Gene Interaction Database)CIZ1
DoCM (Curated mutations)CIZ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIZ1 (select a term)
intoGenCIZ1
Cancer3DCIZ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611420   
Orphanet
MedgenCIZ1
Genetic Testing Registry CIZ1
NextProtQ9ULV3 [Medical]
TSGene25792
GENETestsCIZ1
Huge Navigator CIZ1 [HugePedia]
snp3D : Map Gene to Disease25792
BioCentury BCIQCIZ1
ClinGenCIZ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25792
Chemical/Pharm GKB GenePA134883336
Clinical trialCIZ1
Miscellaneous
canSAR (ICR)CIZ1 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIZ1
EVEXCIZ1
GoPubMedCIZ1
iHOPCIZ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:56:41 CEST 2017

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