Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CKAP2 (cytoskeleton associated protein 2)

Identity

Alias_symbol (synonym)LB1
FLJ10749
se20-10
TMAP
Other alias
HGNC (Hugo) CKAP2
LocusID (NCBI) 26586
Atlas_Id 53897
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 52455360 and ends at 52476631 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
UBL3 (13q12.3) / CKAP2 (13q14.3)UBL3 13q12.3 / CKAP2 13q14.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CKAP2   1990
Cards
Entrez_Gene (NCBI)CKAP2  26586  cytoskeleton associated protein 2
AliasesLB1; TMAP; se20-10
GeneCards (Weizmann)CKAP2
Ensembl hg19 (Hinxton)ENSG00000136108 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136108 [Gene_View]  chr13:52455360-52476631 [Contig_View]  CKAP2 [Vega]
ICGC DataPortalENSG00000136108
TCGA cBioPortalCKAP2
AceView (NCBI)CKAP2
Genatlas (Paris)CKAP2
WikiGenes26586
SOURCE (Princeton)CKAP2
Genetics Home Reference (NIH)CKAP2
Genomic and cartography
GoldenPath hg38 (UCSC)CKAP2  -     chr13:52455360-52476631 +  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CKAP2  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblCKAP2 - 13q14.3 [CytoView hg19]  CKAP2 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBICKAP2 [Mapview hg19]  CKAP2 [Mapview hg38]
OMIM611569   
Gene and transcription
Genbank (Entrez)AA308726 AF177227 AI499799 AK001611 AK022982
RefSeq transcript (Entrez)NM_001098525 NM_001286686 NM_001286687 NM_018204
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CKAP2
Cluster EST : UnigeneHs.594461 [ NCBI ]
CGAP (NCI)Hs.594461
Alternative Splicing GalleryENSG00000136108
Gene ExpressionCKAP2 [ NCBI-GEO ]   CKAP2 [ EBI - ARRAY_EXPRESS ]   CKAP2 [ SEEK ]   CKAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CKAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26586
GTEX Portal (Tissue expression)CKAP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWK9
Splice isoforms : SwissVarQ8WWK9
PhosPhoSitePlusQ8WWK9
Domains : Interpro (EBI)CKAP2_C    CKAP2_fam   
Domain families : Pfam (Sanger)CKAP2_C (PF15297)   
Domain families : Pfam (NCBI)pfam15297   
Conserved Domain (NCBI)CKAP2
DMDM Disease mutations26586
Blocks (Seattle)CKAP2
SuperfamilyQ8WWK9
Human Protein AtlasENSG00000136108
Peptide AtlasQ8WWK9
HPRD10832
IPIIPI00071824   IPI00640794   IPI00896560   IPI00794761   IPI00872604   IPI00946815   IPI01015777   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWK9
IntAct (EBI)Q8WWK9
FunCoupENSG00000136108
BioGRIDCKAP2
STRING (EMBL)CKAP2
ZODIACCKAP2
Ontologies - Pathways
QuickGOQ8WWK9
Ontology : AmiGOmitotic cytokinesis  spindle pole  centrosome  cytosol  cytoplasmic microtubule  apoptotic process  negative regulation of microtubule depolymerization  microtubule cytoskeleton  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBImitotic cytokinesis  spindle pole  centrosome  cytosol  cytoplasmic microtubule  apoptotic process  negative regulation of microtubule depolymerization  microtubule cytoskeleton  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkCKAP2
Atlas of Cancer Signalling NetworkCKAP2
Wikipedia pathwaysCKAP2
Orthology - Evolution
OrthoDB26586
GeneTree (enSembl)ENSG00000136108
Phylogenetic Trees/Animal Genes : TreeFamCKAP2
HOVERGENQ8WWK9
HOGENOMQ8WWK9
Homologs : HomoloGeneCKAP2
Homology/Alignments : Family Browser (UCSC)CKAP2
Gene fusions - Rearrangements
Fusion : MitelmanUBL3/CKAP2 [13q12.3/13q14.3]  [t(13;13)(q12;q14)]  
Fusion: TCGAUBL3 13q12.3 CKAP2 13q14.3 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCKAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CKAP2
dbVarCKAP2
ClinVarCKAP2
1000_GenomesCKAP2 
Exome Variant ServerCKAP2
ExAC (Exome Aggregation Consortium)CKAP2 (select the gene name)
Genetic variants : HAPMAP26586
Genomic Variants (DGV)CKAP2 [DGVbeta]
DECIPHERCKAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCKAP2 
Mutations
ICGC Data PortalCKAP2 
TCGA Data PortalCKAP2 
Broad Tumor PortalCKAP2
OASIS PortalCKAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCKAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCKAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CKAP2
DgiDB (Drug Gene Interaction Database)CKAP2
DoCM (Curated mutations)CKAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CKAP2 (select a term)
intoGenCKAP2
Cancer3DCKAP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611569   
Orphanet
MedgenCKAP2
Genetic Testing Registry CKAP2
NextProtQ8WWK9 [Medical]
TSGene26586
GENETestsCKAP2
Target ValidationCKAP2
Huge Navigator CKAP2 [HugePedia]
snp3D : Map Gene to Disease26586
BioCentury BCIQCKAP2
ClinGenCKAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26586
Chemical/Pharm GKB GenePA26526
Clinical trialCKAP2
Miscellaneous
canSAR (ICR)CKAP2 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKAP2
EVEXCKAP2
GoPubMedCKAP2
iHOPCKAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:58 CEST 2017

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