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CKAP2L (cytoskeleton associated protein 2-like)

Identity

Alias_symbol (synonym)FLJ40629
radmis
Other alias-
HGNC (Hugo) CKAP2L
LocusID (NCBI) 150468
Atlas_Id 61841
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 113493927 and ends at 113522254 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CKAP2L (2q13) / NT5DC4 (2q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CKAP2L   26877
Cards
Entrez_Gene (NCBI)CKAP2L  150468  cytoskeleton associated protein 2-like
Aliases
GeneCards (Weizmann)CKAP2L
Ensembl hg19 (Hinxton)ENSG00000169607 [Gene_View]  chr2:113493927-113522254 [Contig_View]  CKAP2L [Vega]
Ensembl hg38 (Hinxton)ENSG00000169607 [Gene_View]  chr2:113493927-113522254 [Contig_View]  CKAP2L [Vega]
ICGC DataPortalENSG00000169607
TCGA cBioPortalCKAP2L
AceView (NCBI)CKAP2L
Genatlas (Paris)CKAP2L
WikiGenes150468
SOURCE (Princeton)CKAP2L
Genetics Home Reference (NIH)CKAP2L
Genomic and cartography
GoldenPath hg19 (UCSC)CKAP2L  -     chr2:113493927-113522254 -  2q13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CKAP2L  -     2q13   [Description]    (hg38-Dec_2013)
EnsemblCKAP2L - 2q13 [CytoView hg19]  CKAP2L - 2q13 [CytoView hg38]
Mapping of homologs : NCBICKAP2L [Mapview hg19]  CKAP2L [Mapview hg38]
OMIM272440   616174   
Gene and transcription
Genbank (Entrez)AK097948 AK292530 AK302875 AK316241 AL832036
RefSeq transcript (Entrez)NM_001304361 NM_152515
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_041820 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)CKAP2L
Cluster EST : UnigeneHs.434250 [ NCBI ]
CGAP (NCI)Hs.434250
Alternative Splicing GalleryENSG00000169607
Gene ExpressionCKAP2L [ NCBI-GEO ]   CKAP2L [ EBI - ARRAY_EXPRESS ]   CKAP2L [ SEEK ]   CKAP2L [ MEM ]
Gene Expression Viewer (FireBrowse)CKAP2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150468
GTEX Portal (Tissue expression)CKAP2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYA6
Splice isoforms : SwissVarQ8IYA6
PhosPhoSitePlusQ8IYA6
Domains : Interpro (EBI)CKAP2_C    CKAP2_fam   
Domain families : Pfam (Sanger)CKAP2_C (PF15297)   
Domain families : Pfam (NCBI)pfam15297   
Conserved Domain (NCBI)CKAP2L
DMDM Disease mutations150468
Blocks (Seattle)CKAP2L
SuperfamilyQ8IYA6
Human Protein AtlasENSG00000169607
Peptide AtlasQ8IYA6
HPRD08285
IPIIPI00328291   IPI00887050   IPI00917495   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYA6
IntAct (EBI)Q8IYA6
FunCoupENSG00000169607
BioGRIDCKAP2L
STRING (EMBL)CKAP2L
ZODIACCKAP2L
Ontologies - Pathways
QuickGOQ8IYA6
Ontology : AmiGOspindle pole  cytoplasm  centrosome  
Ontology : EGO-EBIspindle pole  cytoplasm  centrosome  
NDEx NetworkCKAP2L
Atlas of Cancer Signalling NetworkCKAP2L
Wikipedia pathwaysCKAP2L
Orthology - Evolution
OrthoDB150468
GeneTree (enSembl)ENSG00000169607
Phylogenetic Trees/Animal Genes : TreeFamCKAP2L
HOVERGENQ8IYA6
HOGENOMQ8IYA6
Homologs : HomoloGeneCKAP2L
Homology/Alignments : Family Browser (UCSC)CKAP2L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCKAP2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CKAP2L
dbVarCKAP2L
ClinVarCKAP2L
1000_GenomesCKAP2L 
Exome Variant ServerCKAP2L
ExAC (Exome Aggregation Consortium)CKAP2L (select the gene name)
Genetic variants : HAPMAP150468
Genomic Variants (DGV)CKAP2L [DGVbeta]
DECIPHER (Syndromes)2:113493927-113522254  ENSG00000169607
CONAN: Copy Number AnalysisCKAP2L 
Mutations
ICGC Data PortalCKAP2L 
TCGA Data PortalCKAP2L 
Broad Tumor PortalCKAP2L
OASIS PortalCKAP2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCKAP2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCKAP2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CKAP2L
DgiDB (Drug Gene Interaction Database)CKAP2L
DoCM (Curated mutations)CKAP2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CKAP2L (select a term)
intoGenCKAP2L
Cancer3DCKAP2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM272440    616174   
Orphanet2910   
MedgenCKAP2L
Genetic Testing Registry CKAP2L
NextProtQ8IYA6 [Medical]
TSGene150468
GENETestsCKAP2L
Huge Navigator CKAP2L [HugePedia]
snp3D : Map Gene to Disease150468
BioCentury BCIQCKAP2L
ClinGenCKAP2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150468
Chemical/Pharm GKB GenePA144596448
Clinical trialCKAP2L
Miscellaneous
canSAR (ICR)CKAP2L (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKAP2L
EVEXCKAP2L
GoPubMedCKAP2L
iHOPCKAP2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:32 CET 2017

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