Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CKAP4 (cytoskeleton associated protein 4)

Identity

Alias_namescytoskeleton-associated protein 4
Alias_symbol (synonym)P63
CLIMP-63
ERGIC-63
Other aliasp63
HGNC (Hugo) CKAP4
LocusID (NCBI) 10970
Atlas_Id 40088
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 106237881 and ends at 106247935 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CKAP4 (12q23.3) / CKAP4 (12q23.3)CKAP4 (12q23.3) / COL1A1 (17q21.33)CKAP4 (12q23.3) / STYXL1 (7q11.23)
FBRSL1 (12q24.33) / CKAP4 (12q23.3)UTRN (6q24.2) / CKAP4 (12q23.3)FBRSL1 12q24.33 / CKAP4 12q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CKAP4   16991
Cards
Entrez_Gene (NCBI)CKAP4  10970  cytoskeleton associated protein 4
AliasesCLIMP-63; ERGIC-63; p63
GeneCards (Weizmann)CKAP4
Ensembl hg19 (Hinxton)ENSG00000136026 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136026 [Gene_View]  chr12:106237881-106247935 [Contig_View]  CKAP4 [Vega]
ICGC DataPortalENSG00000136026
TCGA cBioPortalCKAP4
AceView (NCBI)CKAP4
Genatlas (Paris)CKAP4
WikiGenes10970
SOURCE (Princeton)CKAP4
Genetics Home Reference (NIH)CKAP4
Genomic and cartography
GoldenPath hg38 (UCSC)CKAP4  -     chr12:106237881-106247935 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CKAP4  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblCKAP4 - 12q23.3 [CytoView hg19]  CKAP4 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBICKAP4 [Mapview hg19]  CKAP4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123693 AK223563 BC015436 BC025341 BC037578
RefSeq transcript (Entrez)NM_006825
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CKAP4
Cluster EST : UnigeneHs.74368 [ NCBI ]
CGAP (NCI)Hs.74368
Alternative Splicing GalleryENSG00000136026
Gene ExpressionCKAP4 [ NCBI-GEO ]   CKAP4 [ EBI - ARRAY_EXPRESS ]   CKAP4 [ SEEK ]   CKAP4 [ MEM ]
Gene Expression Viewer (FireBrowse)CKAP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10970
GTEX Portal (Tissue expression)CKAP4
Human Protein AtlasENSG00000136026-CKAP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07065   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ07065  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ07065
Splice isoforms : SwissVarQ07065
PhosPhoSitePlusQ07065
Domains : Interpro (EBI)Ckap4   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CKAP4
DMDM Disease mutations10970
Blocks (Seattle)CKAP4
SuperfamilyQ07065
Human Protein Atlas [tissue]ENSG00000136026-CKAP4 [tissue]
Peptide AtlasQ07065
HPRD16717
IPIIPI00141318   IPI00604713   IPI00939370   IPI00883950   IPI01022730   
Protein Interaction databases
DIP (DOE-UCLA)Q07065
IntAct (EBI)Q07065
FunCoupENSG00000136026
BioGRIDCKAP4
STRING (EMBL)CKAP4
ZODIACCKAP4
Ontologies - Pathways
QuickGOQ07065
Ontology : AmiGOP-body  RNA binding  endoplasmic reticulum  endoplasmic reticulum membrane  lipid particle  cytosol  cytoskeleton  plasma membrane  membrane  integral component of membrane  nuclear speck  extracellular matrix  azurophil granule membrane  specific granule membrane  lamellar body  neutrophil degranulation  cellular protein metabolic process  perinuclear region of cytoplasm  extracellular exosome  
Ontology : EGO-EBIP-body  RNA binding  endoplasmic reticulum  endoplasmic reticulum membrane  lipid particle  cytosol  cytoskeleton  plasma membrane  membrane  integral component of membrane  nuclear speck  extracellular matrix  azurophil granule membrane  specific granule membrane  lamellar body  neutrophil degranulation  cellular protein metabolic process  perinuclear region of cytoplasm  extracellular exosome  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkCKAP4
Atlas of Cancer Signalling NetworkCKAP4
Wikipedia pathwaysCKAP4
Orthology - Evolution
OrthoDB10970
GeneTree (enSembl)ENSG00000136026
Phylogenetic Trees/Animal Genes : TreeFamCKAP4
HOVERGENQ07065
HOGENOMQ07065
Homologs : HomoloGeneCKAP4
Homology/Alignments : Family Browser (UCSC)CKAP4
Gene fusions - Rearrangements
Fusion : MitelmanFBRSL1/CKAP4 [12q24.33/12q23.3]  [t(12;12)(q23;q24)]  
Fusion: TCGAFBRSL1 12q24.33 CKAP4 12q23.3 LUSC
Fusion: Tumor Portal CKAP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCKAP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CKAP4
dbVarCKAP4
ClinVarCKAP4
1000_GenomesCKAP4 
Exome Variant ServerCKAP4
ExAC (Exome Aggregation Consortium)ENSG00000136026
GNOMAD BrowserENSG00000136026
Genetic variants : HAPMAP10970
Genomic Variants (DGV)CKAP4 [DGVbeta]
DECIPHERCKAP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCKAP4 
Mutations
ICGC Data PortalCKAP4 
TCGA Data PortalCKAP4 
Broad Tumor PortalCKAP4
OASIS PortalCKAP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCKAP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCKAP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CKAP4
DgiDB (Drug Gene Interaction Database)CKAP4
DoCM (Curated mutations)CKAP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CKAP4 (select a term)
intoGenCKAP4
Cancer3DCKAP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCKAP4
Genetic Testing Registry CKAP4
NextProtQ07065 [Medical]
TSGene10970
GENETestsCKAP4
Target ValidationCKAP4
Huge Navigator CKAP4 [HugePedia]
snp3D : Map Gene to Disease10970
BioCentury BCIQCKAP4
ClinGenCKAP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10970
Chemical/Pharm GKB GenePA26527
Clinical trialCKAP4
Miscellaneous
canSAR (ICR)CKAP4 (select the gene name)
Probes
Litterature
PubMed80 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKAP4
EVEXCKAP4
GoPubMedCKAP4
iHOPCKAP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:44:54 CET 2017

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