Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CKAP5 (cytoskeleton associated protein 5)

Identity

Alias_symbol (synonym)ch-TOG
KIAA0097
TOG
TOGp
Other aliasCHTOG
MSPS
HGNC (Hugo) CKAP5
LocusID (NCBI) 9793
Atlas_Id 46139
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46765084 and ends at 46867859 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BAZ2A (12q13.3) / CKAP5 (11p11.2)CAD (2p23.3) / CKAP5 (11p11.2)CKAP5 (11p11.2) / STATH (4q13.3)
CKAP5 (11p11.2) / TMEM135 (11q14.2)CKAP5 (11p11.2) / VMP1 (17q23.1)FRMD5 (15q15.3) / CKAP5 (11p11.2)
PTPN12 (7q11.23) / CKAP5 (11p11.2)ZNF43 (19p12) / CKAP5 (11p11.2)CKAP5 11p11.2 / TMEM135 11q14.2
CKAP5 11p11.2 / VMP1 17q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CKAP5   28959
Cards
Entrez_Gene (NCBI)CKAP5  9793  cytoskeleton associated protein 5
AliasesCHTOG; MSPS; TOG; TOGp; 
ch-TOG
GeneCards (Weizmann)CKAP5
Ensembl hg19 (Hinxton)ENSG00000175216 [Gene_View]  chr11:46765084-46867859 [Contig_View]  CKAP5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175216 [Gene_View]  chr11:46765084-46867859 [Contig_View]  CKAP5 [Vega]
ICGC DataPortalENSG00000175216
TCGA cBioPortalCKAP5
AceView (NCBI)CKAP5
Genatlas (Paris)CKAP5
WikiGenes9793
SOURCE (Princeton)CKAP5
Genetics Home Reference (NIH)CKAP5
Genomic and cartography
GoldenPath hg19 (UCSC)CKAP5  -     chr11:46765084-46867859 -  11p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CKAP5  -     11p11.2   [Description]    (hg38-Dec_2013)
EnsemblCKAP5 - 11p11.2 [CytoView hg19]  CKAP5 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBICKAP5 [Mapview hg19]  CKAP5 [Mapview hg38]
OMIM611142   
Gene and transcription
Genbank (Entrez)AW504660 BC017856 BC035554 BC070136 BC111043
RefSeq transcript (Entrez)NM_001008938 NM_014756
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_029924 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)CKAP5
Cluster EST : UnigeneHs.737795 [ NCBI ]
CGAP (NCI)Hs.737795
Alternative Splicing GalleryENSG00000175216
Gene ExpressionCKAP5 [ NCBI-GEO ]   CKAP5 [ EBI - ARRAY_EXPRESS ]   CKAP5 [ SEEK ]   CKAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)CKAP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9793
GTEX Portal (Tissue expression)CKAP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14008   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14008  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14008
Splice isoforms : SwissVarQ14008
PhosPhoSitePlusQ14008
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    CLASP_N_dom    HEAT_type_2   
Domain families : Pfam (Sanger)CLASP_N (PF12348)   
Domain families : Pfam (NCBI)pfam12348   
Conserved Domain (NCBI)CKAP5
DMDM Disease mutations9793
Blocks (Seattle)CKAP5
PDB (SRS)4QMI    4QMJ   
PDB (PDBSum)4QMI    4QMJ   
PDB (IMB)4QMI    4QMJ   
PDB (RSDB)4QMI    4QMJ   
Structural Biology KnowledgeBase4QMI    4QMJ   
SCOP (Structural Classification of Proteins)4QMI    4QMJ   
CATH (Classification of proteins structures)4QMI    4QMJ   
SuperfamilyQ14008
Human Protein AtlasENSG00000175216
Peptide AtlasQ14008
HPRD10830
IPIIPI00028275   IPI00472887   IPI00921422   IPI00749072   IPI00983532   IPI00975590   IPI00976169   
Protein Interaction databases
DIP (DOE-UCLA)Q14008
IntAct (EBI)Q14008
FunCoupENSG00000175216
BioGRIDCKAP5
STRING (EMBL)CKAP5
ZODIACCKAP5
Ontologies - Pathways
QuickGOQ14008
Ontology : AmiGOG2/M transition of mitotic cell cycle  spindle pole  gamma-tubulin complex  protein binding  centrosome  cytosol  spindle organization  sister chromatid cohesion  mitotic nuclear division  microtubule cytoskeleton  membrane  establishment or maintenance of microtubule cytoskeleton polarity  microtubule plus-end  protein complex  RNA transport  centrosome organization  cell division  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  spindle pole  gamma-tubulin complex  protein binding  centrosome  cytosol  spindle organization  sister chromatid cohesion  mitotic nuclear division  microtubule cytoskeleton  membrane  establishment or maintenance of microtubule cytoskeleton polarity  microtubule plus-end  protein complex  RNA transport  centrosome organization  cell division  
NDEx NetworkCKAP5
Atlas of Cancer Signalling NetworkCKAP5
Wikipedia pathwaysCKAP5
Orthology - Evolution
OrthoDB9793
GeneTree (enSembl)ENSG00000175216
Phylogenetic Trees/Animal Genes : TreeFamCKAP5
HOVERGENQ14008
HOGENOMQ14008
Homologs : HomoloGeneCKAP5
Homology/Alignments : Family Browser (UCSC)CKAP5
Gene fusions - Rearrangements
Fusion : MitelmanCKAP5/TMEM135 [11p11.2/11q14.2]  
Fusion : MitelmanCKAP5/VMP1 [11p11.2/17q23.1]  [t(11;17)(p11;q23)]  
Fusion: TCGACKAP5 11p11.2 TMEM135 11q14.2 LGG
Fusion: TCGACKAP5 11p11.2 VMP1 17q23.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCKAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CKAP5
dbVarCKAP5
ClinVarCKAP5
1000_GenomesCKAP5 
Exome Variant ServerCKAP5
ExAC (Exome Aggregation Consortium)CKAP5 (select the gene name)
Genetic variants : HAPMAP9793
Genomic Variants (DGV)CKAP5 [DGVbeta]
DECIPHER (Syndromes)11:46765084-46867859  ENSG00000175216
CONAN: Copy Number AnalysisCKAP5 
Mutations
ICGC Data PortalCKAP5 
TCGA Data PortalCKAP5 
Broad Tumor PortalCKAP5
OASIS PortalCKAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCKAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCKAP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CKAP5
DgiDB (Drug Gene Interaction Database)CKAP5
DoCM (Curated mutations)CKAP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CKAP5 (select a term)
intoGenCKAP5
Cancer3DCKAP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611142   
Orphanet
MedgenCKAP5
Genetic Testing Registry CKAP5
NextProtQ14008 [Medical]
TSGene9793
GENETestsCKAP5
Huge Navigator CKAP5 [HugePedia]
snp3D : Map Gene to Disease9793
BioCentury BCIQCKAP5
ClinGenCKAP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9793
Chemical/Pharm GKB GenePA142672107
Clinical trialCKAP5
Miscellaneous
canSAR (ICR)CKAP5 (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKAP5
EVEXCKAP5
GoPubMedCKAP5
iHOPCKAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:00:39 CET 2017

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