Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CKAP5 (cytoskeleton associated protein 5)

Identity

Alias_symbol (synonym)ch-TOG
KIAA0097
TOG
TOGp
Other aliasCHTOG
MSPS
HGNC (Hugo) CKAP5
LocusID (NCBI) 9793
Atlas_Id 46139
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 46743534 and ends at 46846308 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BAZ2A (12q13.3) / CKAP5 (11p11.2)CAD (2p23.3) / CKAP5 (11p11.2)CKAP5 (11p11.2) / STATH (4q13.3)
CKAP5 (11p11.2) / TMEM135 (11q14.2)CKAP5 (11p11.2) / VMP1 (17q23.1)FRMD5 (15q15.3) / CKAP5 (11p11.2)
PTPN12 (7q11.23) / CKAP5 (11p11.2)ZNF43 (19p12) / CKAP5 (11p11.2)CKAP5 11p11.2 / TMEM135 11q14.2
CKAP5 11p11.2 / VMP1 17q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t1111p11q14ID100490 TT_t1117p11q23ID100949

External links

Nomenclature
HGNC (Hugo)CKAP5   28959
Cards
Entrez_Gene (NCBI)CKAP5  9793  cytoskeleton associated protein 5
AliasesCHTOG; MSPS; TOG; TOGp; 
ch-TOG
GeneCards (Weizmann)CKAP5
Ensembl hg19 (Hinxton)ENSG00000175216 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175216 [Gene_View]  ENSG00000175216 [Sequence]  chr11:46743534-46846308 [Contig_View]  CKAP5 [Vega]
ICGC DataPortalENSG00000175216
TCGA cBioPortalCKAP5
AceView (NCBI)CKAP5
Genatlas (Paris)CKAP5
WikiGenes9793
SOURCE (Princeton)CKAP5
Genetics Home Reference (NIH)CKAP5
Genomic and cartography
GoldenPath hg38 (UCSC)CKAP5  -     chr11:46743534-46846308 -  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CKAP5  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathCKAP5 - 11p11.2 [CytoView hg19]  CKAP5 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000175216
Mapping of homologs : NCBICKAP5 [Mapview hg19]  CKAP5 [Mapview hg38]
OMIM611142   
Gene and transcription
Genbank (Entrez)AW504660 BC017856 BC035554 BC070136 BC111043
RefSeq transcript (Entrez)NM_001008938 NM_014756
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CKAP5
Cluster EST : UnigeneHs.737795 [ NCBI ]
CGAP (NCI)Hs.737795
Alternative Splicing GalleryENSG00000175216
Gene ExpressionCKAP5 [ NCBI-GEO ]   CKAP5 [ EBI - ARRAY_EXPRESS ]   CKAP5 [ SEEK ]   CKAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)CKAP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9793
GTEX Portal (Tissue expression)CKAP5
Human Protein AtlasENSG00000175216-CKAP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14008   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14008  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14008
Splice isoforms : SwissVarQ14008
PhosPhoSitePlusQ14008
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    CLASP_N_dom    HEAT_type_2    TOG   
Domain families : Pfam (Sanger)CLASP_N (PF12348)   
Domain families : Pfam (NCBI)pfam12348   
Domain families : Smart (EMBL)TOG (SM01349)  
Conserved Domain (NCBI)CKAP5
DMDM Disease mutations9793
Blocks (Seattle)CKAP5
PDB (RSDB)4QMI    4QMJ   
PDB Europe4QMI    4QMJ   
PDB (PDBSum)4QMI    4QMJ   
PDB (IMB)4QMI    4QMJ   
Structural Biology KnowledgeBase4QMI    4QMJ   
SCOP (Structural Classification of Proteins)4QMI    4QMJ   
CATH (Classification of proteins structures)4QMI    4QMJ   
SuperfamilyQ14008
Human Protein Atlas [tissue]ENSG00000175216-CKAP5 [tissue]
Peptide AtlasQ14008
HPRD10830
IPIIPI00028275   IPI00472887   IPI00921422   IPI00749072   IPI00983532   IPI00975590   IPI00976169   
Protein Interaction databases
DIP (DOE-UCLA)Q14008
IntAct (EBI)Q14008
FunCoupENSG00000175216
BioGRIDCKAP5
STRING (EMBL)CKAP5
ZODIACCKAP5
Ontologies - Pathways
QuickGOQ14008
Ontology : AmiGOG2/M transition of mitotic cell cycle  kinetochore  kinetochore  condensed chromosome kinetochore  spindle pole  spindle pole  gamma-tubulin complex  protein binding  nucleolus  centrosome  centrosome  cytosol  plasma membrane  microtubule depolymerization  spindle organization  spindle organization  centrosome cycle  regulation of G2/M transition of mitotic cell cycle  microtubule cytoskeleton  membrane  establishment or maintenance of microtubule cytoskeleton polarity  establishment or maintenance of microtubule cytoskeleton polarity  protein-containing complex  microtubule plus-end  microtubule plus-end  cadherin binding  microtubule polymerization  microtubule polymerization  RNA transport  microtubule plus-end binding  centrosome duplication  cell division  ciliary basal body-plasma membrane docking  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  kinetochore  kinetochore  condensed chromosome kinetochore  spindle pole  spindle pole  gamma-tubulin complex  protein binding  nucleolus  centrosome  centrosome  cytosol  plasma membrane  microtubule depolymerization  spindle organization  spindle organization  centrosome cycle  regulation of G2/M transition of mitotic cell cycle  microtubule cytoskeleton  membrane  establishment or maintenance of microtubule cytoskeleton polarity  establishment or maintenance of microtubule cytoskeleton polarity  protein-containing complex  microtubule plus-end  microtubule plus-end  cadherin binding  microtubule polymerization  microtubule polymerization  RNA transport  microtubule plus-end binding  centrosome duplication  cell division  ciliary basal body-plasma membrane docking  
NDEx NetworkCKAP5
Atlas of Cancer Signalling NetworkCKAP5
Wikipedia pathwaysCKAP5
Orthology - Evolution
OrthoDB9793
GeneTree (enSembl)ENSG00000175216
Phylogenetic Trees/Animal Genes : TreeFamCKAP5
HOGENOMQ14008
Homologs : HomoloGeneCKAP5
Homology/Alignments : Family Browser (UCSC)CKAP5
Gene fusions - Rearrangements
Fusion : MitelmanCKAP5/TMEM135 [11p11.2/11q14.2]  
Fusion : MitelmanCKAP5/VMP1 [11p11.2/17q23.1]  [t(11;17)(p11;q23)]  
Fusion PortalCKAP5 11p11.2 TMEM135 11q14.2 LGG
Fusion PortalCKAP5 11p11.2 VMP1 17q23.1 BRCA
Fusion : QuiverCKAP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCKAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CKAP5
dbVarCKAP5
ClinVarCKAP5
1000_GenomesCKAP5 
Exome Variant ServerCKAP5
ExAC (Exome Aggregation Consortium)ENSG00000175216
GNOMAD BrowserENSG00000175216
Varsome BrowserCKAP5
Genetic variants : HAPMAP9793
Genomic Variants (DGV)CKAP5 [DGVbeta]
DECIPHERCKAP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCKAP5 
Mutations
ICGC Data PortalCKAP5 
TCGA Data PortalCKAP5 
Broad Tumor PortalCKAP5
OASIS PortalCKAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCKAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCKAP5
Mutations and Diseases : HGMDCKAP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CKAP5
DgiDB (Drug Gene Interaction Database)CKAP5
DoCM (Curated mutations)CKAP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CKAP5 (select a term)
intoGenCKAP5
Cancer3DCKAP5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611142   
Orphanet
DisGeNETCKAP5
MedgenCKAP5
Genetic Testing Registry CKAP5
NextProtQ14008 [Medical]
TSGene9793
GENETestsCKAP5
Target ValidationCKAP5
Huge Navigator CKAP5 [HugePedia]
snp3D : Map Gene to Disease9793
BioCentury BCIQCKAP5
ClinGenCKAP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9793
Chemical/Pharm GKB GenePA142672107
Clinical trialCKAP5
Miscellaneous
canSAR (ICR)CKAP5 (select the gene name)
DataMed IndexCKAP5
Probes
Litterature
PubMed101 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKAP5
EVEXCKAP5
GoPubMedCKAP5
iHOPCKAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jan 27 14:36:25 CET 2020
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