Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CKLF-CMTM1 (CKLF-CMTM1 readthrough)

Identity

Other alias-
HGNC (Hugo) CKLF-CMTM1
LocusID (NCBI) 100529251
Atlas_Id 61843
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 66586466 and ends at 66613038 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CKLF-CMTM1 (16q21) / RHOQ (2p21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CKLF-CMTM1   39977
Cards
Entrez_Gene (NCBI)CKLF-CMTM1  100529251  CKLF-CMTM1 readthrough
Aliases
GeneCards (Weizmann)CKLF-CMTM1
Ensembl hg19 (Hinxton)ENSG00000254788 [Gene_View]  chr16:66586466-66613038 [Contig_View]  CKLF-CMTM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000254788 [Gene_View]  chr16:66586466-66613038 [Contig_View]  CKLF-CMTM1 [Vega]
ICGC DataPortalENSG00000254788
TCGA cBioPortalCKLF-CMTM1
AceView (NCBI)CKLF-CMTM1
Genatlas (Paris)CKLF-CMTM1
WikiGenes100529251
SOURCE (Princeton)CKLF-CMTM1
Genetics Home Reference (NIH)CKLF-CMTM1
Genomic and cartography
GoldenPath hg19 (UCSC)CKLF-CMTM1  -     chr16:66586466-66613038 +  16q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CKLF-CMTM1  -     16q21   [Description]    (hg38-Dec_2013)
EnsemblCKLF-CMTM1 - 16q21 [CytoView hg19]  CKLF-CMTM1 - 16q21 [CytoView hg38]
Mapping of homologs : NCBICKLF-CMTM1 [Mapview hg19]  CKLF-CMTM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM929895 FY211334 FY212695
RefSeq transcript (Entrez)NM_001202509 NM_001204098 NM_001204099
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CKLF-CMTM1
Cluster EST : UnigeneHs.698621 [ NCBI ]
CGAP (NCI)Hs.698621
Alternative Splicing GalleryENSG00000254788
Gene ExpressionCKLF-CMTM1 [ NCBI-GEO ]   CKLF-CMTM1 [ EBI - ARRAY_EXPRESS ]   CKLF-CMTM1 [ SEEK ]   CKLF-CMTM1 [ MEM ]
Gene Expression Viewer (FireBrowse)CKLF-CMTM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100529251
GTEX Portal (Tissue expression)CKLF-CMTM1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CKLF-CMTM1
DMDM Disease mutations100529251
Blocks (Seattle)CKLF-CMTM1
Human Protein AtlasENSG00000254788
IPIIPI00027219   IPI00006023   IPI00008841   IPI00014321   IPI00746163   IPI00749098   IPI00976001   IPI00981204   IPI00977163   IPI00984334   IPI00979081   
Protein Interaction databases
FunCoupENSG00000254788
BioGRIDCKLF-CMTM1
STRING (EMBL)CKLF-CMTM1
ZODIACCKLF-CMTM1
Ontologies - Pathways
Huge Navigator CKLF-CMTM1 [HugePedia]
snp3D : Map Gene to Disease100529251
BioCentury BCIQCKLF-CMTM1
ClinGenCKLF-CMTM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100529251
Clinical trialCKLF-CMTM1
Miscellaneous
canSAR (ICR)CKLF-CMTM1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKLF-CMTM1
EVEXCKLF-CMTM1
GoPubMedCKLF-CMTM1
iHOPCKLF-CMTM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:32 CET 2017

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