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CKLF (chemokine like factor)

Identity

Alias_namesCKLF1
chemokine-like factor 1
Alias_symbol (synonym)UCK-1
CKLF3
CKLF4
HSPC224
C32
Other aliasCKLF2
HGNC (Hugo) CKLF
LocusID (NCBI) 51192
Atlas_Id 56077
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 66552563 and ends at 66566287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CKLF (16q21) / CKLF (16q21)KCP (7q32.1) / CKLF (16q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CKLF   13253
Cards
Entrez_Gene (NCBI)CKLF  51192  chemokine like factor
AliasesC32; CKLF1; CKLF2; CKLF3; 
CKLF4; HSPC224; UCK-1
GeneCards (Weizmann)CKLF
Ensembl hg19 (Hinxton)ENSG00000217555 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000217555 [Gene_View]  ENSG00000217555 [Sequence]  chr16:66552563-66566287 [Contig_View]  CKLF [Vega]
ICGC DataPortalENSG00000217555
TCGA cBioPortalCKLF
AceView (NCBI)CKLF
Genatlas (Paris)CKLF
WikiGenes51192
SOURCE (Princeton)CKLF
Genetics Home Reference (NIH)CKLF
Genomic and cartography
GoldenPath hg38 (UCSC)CKLF  -     chr16:66552563-66566287 +  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CKLF  -     16q21   [Description]    (hg19-Feb_2009)
EnsemblCKLF - 16q21 [CytoView hg19]  CKLF - 16q21 [CytoView hg38]
Mapping of homologs : NCBICKLF [Mapview hg19]  CKLF [Mapview hg38]
OMIM616074   
Gene and transcription
Genbank (Entrez)AA234074 AF057306 AF096895 AF135380 AF135381
RefSeq transcript (Entrez)NM_001040138 NM_001040139 NM_016326 NM_016951 NM_181640 NM_181641
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CKLF
Cluster EST : UnigeneHs.698621 [ NCBI ]
CGAP (NCI)Hs.698621
Alternative Splicing GalleryENSG00000217555
Gene ExpressionCKLF [ NCBI-GEO ]   CKLF [ EBI - ARRAY_EXPRESS ]   CKLF [ SEEK ]   CKLF [ MEM ]
Gene Expression Viewer (FireBrowse)CKLF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51192
GTEX Portal (Tissue expression)CKLF
Human Protein AtlasENSG00000217555-CKLF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBR5
Splice isoforms : SwissVarQ9UBR5
PhosPhoSitePlusQ9UBR5
Domaine pattern : Prosite (Expaxy)MARVEL (PS51225)   
Domains : Interpro (EBI)Marvel   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CKLF
DMDM Disease mutations51192
Blocks (Seattle)CKLF
SuperfamilyQ9UBR5
Human Protein Atlas [tissue]ENSG00000217555-CKLF [tissue]
Peptide AtlasQ9UBR5
HPRD16718
Protein Interaction databases
DIP (DOE-UCLA)Q9UBR5
IntAct (EBI)Q9UBR5
FunCoupENSG00000217555
BioGRIDCKLF
STRING (EMBL)CKLF
ZODIACCKLF
Ontologies - Pathways
QuickGOQ9UBR5
Ontology : AmiGOextracellular region  extracellular space  chemokine activity  cell proliferation  regulation of signaling receptor activity  membrane  integral component of membrane  integral component of membrane  neutrophil chemotaxis  secretion by cell  macrophage chemotaxis  lymphocyte chemotaxis  
Ontology : EGO-EBIextracellular region  extracellular space  chemokine activity  cell proliferation  regulation of signaling receptor activity  membrane  integral component of membrane  integral component of membrane  neutrophil chemotaxis  secretion by cell  macrophage chemotaxis  lymphocyte chemotaxis  
NDEx NetworkCKLF
Atlas of Cancer Signalling NetworkCKLF
Wikipedia pathwaysCKLF
Orthology - Evolution
OrthoDB51192
GeneTree (enSembl)ENSG00000217555
Phylogenetic Trees/Animal Genes : TreeFamCKLF
HOVERGENQ9UBR5
HOGENOMQ9UBR5
Homologs : HomoloGeneCKLF
Homology/Alignments : Family Browser (UCSC)CKLF
Gene fusions - Rearrangements
Fusion : QuiverCKLF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCKLF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CKLF
dbVarCKLF
ClinVarCKLF
1000_GenomesCKLF 
Exome Variant ServerCKLF
ExAC (Exome Aggregation Consortium)ENSG00000217555
GNOMAD BrowserENSG00000217555
Varsome BrowserCKLF
Genetic variants : HAPMAP51192
Genomic Variants (DGV)CKLF [DGVbeta]
DECIPHERCKLF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCKLF 
Mutations
ICGC Data PortalCKLF 
TCGA Data PortalCKLF 
Broad Tumor PortalCKLF
OASIS PortalCKLF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCKLF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCKLF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CKLF
DgiDB (Drug Gene Interaction Database)CKLF
DoCM (Curated mutations)CKLF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CKLF (select a term)
intoGenCKLF
Cancer3DCKLF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616074   
Orphanet
DisGeNETCKLF
MedgenCKLF
Genetic Testing Registry CKLF
NextProtQ9UBR5 [Medical]
TSGene51192
GENETestsCKLF
Target ValidationCKLF
Huge Navigator CKLF [HugePedia]
snp3D : Map Gene to Disease51192
BioCentury BCIQCKLF
ClinGenCKLF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51192
Chemical/Pharm GKB GenePA26531
Clinical trialCKLF
Miscellaneous
canSAR (ICR)CKLF (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKLF
EVEXCKLF
GoPubMedCKLF
iHOPCKLF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 6 10:58:33 CET 2018

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