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CKM (creatine kinase, M-type)

Identity

Alias_namesCKMM
creatine kinase
Other aliasM-CK
HGNC (Hugo) CKM
LocusID (NCBI) 1158
Atlas_Id 56513
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45306413 and ends at 45322977 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CKM (19q13.32) / CKM (19q13.32)CKM (19q13.32) / MYOZ2 (4q26)CKM (19q13.32) / PLD2 (17p13.2)
CKM (19q13.32) / SIAE (11q24.2)MUC2 (11p15.5) / CKM (19q13.32)PRKD2 (19q13.32) / CKM (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CKM   1994
Cards
Entrez_Gene (NCBI)CKM  1158  creatine kinase, M-type
AliasesCKMM; M-CK
GeneCards (Weizmann)CKM
Ensembl hg19 (Hinxton)ENSG00000104879 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104879 [Gene_View]  chr19:45306413-45322977 [Contig_View]  CKM [Vega]
ICGC DataPortalENSG00000104879
TCGA cBioPortalCKM
AceView (NCBI)CKM
Genatlas (Paris)CKM
WikiGenes1158
SOURCE (Princeton)CKM
Genetics Home Reference (NIH)CKM
Genomic and cartography
GoldenPath hg38 (UCSC)CKM  -     chr19:45306413-45322977 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CKM  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblCKM - 19q13.32 [CytoView hg19]  CKM - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBICKM [Mapview hg19]  CKM [Mapview hg38]
OMIM123310   
Gene and transcription
Genbank (Entrez)AJ572902 AK129878 AK300730 AK313281 BC007462
RefSeq transcript (Entrez)NM_001824
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CKM
Cluster EST : UnigeneHs.334347 [ NCBI ]
CGAP (NCI)Hs.334347
Alternative Splicing GalleryENSG00000104879
Gene ExpressionCKM [ NCBI-GEO ]   CKM [ EBI - ARRAY_EXPRESS ]   CKM [ SEEK ]   CKM [ MEM ]
Gene Expression Viewer (FireBrowse)CKM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1158
GTEX Portal (Tissue expression)CKM
Protein : pattern, domain, 3D structure
UniProt/SwissProtP06732   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP06732  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP06732
Splice isoforms : SwissVarP06732
Catalytic activity : Enzyme2.7.3.2 [ Enzyme-Expasy ]   2.7.3.22.7.3.2 [ IntEnz-EBI ]   2.7.3.2 [ BRENDA ]   2.7.3.2 [ KEGG ]   
PhosPhoSitePlusP06732
Domaine pattern : Prosite (Expaxy)PHOSPHAGEN_KINASE (PS00112)    PHOSPHAGEN_KINASE_C (PS51510)    PHOSPHAGEN_KINASE_N (PS51509)   
Domains : Interpro (EBI)ATP-guanido_PTrfase    ATP-guanido_PTrfase_AS    ATP-guanido_PTrfase_cat    ATP-guanido_PTrfase_N    Gln_synth/guanido_kin_cat_dom   
Domain families : Pfam (Sanger)ATP-gua_Ptrans (PF00217)    ATP-gua_PtransN (PF02807)   
Domain families : Pfam (NCBI)pfam00217    pfam02807   
Conserved Domain (NCBI)CKM
DMDM Disease mutations1158
Blocks (Seattle)CKM
PDB (SRS)1I0E   
PDB (PDBSum)1I0E   
PDB (IMB)1I0E   
PDB (RSDB)1I0E   
Structural Biology KnowledgeBase1I0E   
SCOP (Structural Classification of Proteins)1I0E   
CATH (Classification of proteins structures)1I0E   
SuperfamilyP06732
Human Protein AtlasENSG00000104879
Peptide AtlasP06732
HPRD00426
IPIIPI00027487   IPI00909684   
Protein Interaction databases
DIP (DOE-UCLA)P06732
IntAct (EBI)P06732
FunCoupENSG00000104879
BioGRIDCKM
STRING (EMBL)CKM
ZODIACCKM
Ontologies - Pathways
QuickGOP06732
Ontology : AmiGOcreatine kinase activity  protein binding  ATP binding  cytosol  creatine metabolic process  phosphorylation  phosphocreatine biosynthetic process  
Ontology : EGO-EBIcreatine kinase activity  protein binding  ATP binding  cytosol  creatine metabolic process  phosphorylation  phosphocreatine biosynthetic process  
Pathways : BIOCARTASARS Coronavirus Protease [Genes]   
Pathways : KEGGArginine and proline metabolism   
NDEx NetworkCKM
Atlas of Cancer Signalling NetworkCKM
Wikipedia pathwaysCKM
Orthology - Evolution
OrthoDB1158
GeneTree (enSembl)ENSG00000104879
Phylogenetic Trees/Animal Genes : TreeFamCKM
HOVERGENP06732
HOGENOMP06732
Homologs : HomoloGeneCKM
Homology/Alignments : Family Browser (UCSC)CKM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCKM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CKM
dbVarCKM
ClinVarCKM
1000_GenomesCKM 
Exome Variant ServerCKM
ExAC (Exome Aggregation Consortium)CKM (select the gene name)
Genetic variants : HAPMAP1158
Genomic Variants (DGV)CKM [DGVbeta]
DECIPHERCKM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCKM 
Mutations
ICGC Data PortalCKM 
TCGA Data PortalCKM 
Broad Tumor PortalCKM
OASIS PortalCKM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCKM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCKM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CKM
DgiDB (Drug Gene Interaction Database)CKM
DoCM (Curated mutations)CKM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CKM (select a term)
intoGenCKM
Cancer3DCKM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123310   
Orphanet
MedgenCKM
Genetic Testing Registry CKM
NextProtP06732 [Medical]
TSGene1158
GENETestsCKM
Target ValidationCKM
Huge Navigator CKM [HugePedia]
snp3D : Map Gene to Disease1158
BioCentury BCIQCKM
ClinGenCKM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1158
Chemical/Pharm GKB GenePA26532
Clinical trialCKM
Miscellaneous
canSAR (ICR)CKM (select the gene name)
Probes
Litterature
PubMed100 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKM
EVEXCKM
GoPubMedCKM
iHOPCKM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:28:33 CEST 2017

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