Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CKMT1B (creatine kinase, mitochondrial 1B)

Identity

Alias_namesCKMT
CKMT1
creatine kinase
Alias_symbol (synonym)UMTCK
Other alias
HGNC (Hugo) CKMT1B
LocusID (NCBI) 1159
Atlas_Id 40089
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43592857 and ends at 43599406 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CKMT1B   1995
Cards
Entrez_Gene (NCBI)CKMT1B  1159  creatine kinase, mitochondrial 1B
AliasesCKMT; CKMT1; UMTCK
GeneCards (Weizmann)CKMT1B
Ensembl hg19 (Hinxton)ENSG00000237289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237289 [Gene_View]  chr15:43592857-43599406 [Contig_View]  CKMT1B [Vega]
ICGC DataPortalENSG00000237289
TCGA cBioPortalCKMT1B
AceView (NCBI)CKMT1B
Genatlas (Paris)CKMT1B
WikiGenes1159
SOURCE (Princeton)CKMT1B
Genetics Home Reference (NIH)CKMT1B
Genomic and cartography
GoldenPath hg38 (UCSC)CKMT1B  -     chr15:43592857-43599406 +  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CKMT1B  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblCKMT1B - 15q15.3 [CytoView hg19]  CKMT1B - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBICKMT1B [Mapview hg19]  CKMT1B [Mapview hg38]
OMIM123290   
Gene and transcription
Genbank (Entrez)AK094322 AK293685 AK293790 AK293939 AK293961
RefSeq transcript (Entrez)NM_020990
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CKMT1B
Cluster EST : UnigeneHs.741420 [ NCBI ]
CGAP (NCI)Hs.741420
Alternative Splicing GalleryENSG00000237289
Gene ExpressionCKMT1B [ NCBI-GEO ]   CKMT1B [ EBI - ARRAY_EXPRESS ]   CKMT1B [ SEEK ]   CKMT1B [ MEM ]
Gene Expression Viewer (FireBrowse)CKMT1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1159
GTEX Portal (Tissue expression)CKMT1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP12532   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP12532  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP12532
Splice isoforms : SwissVarP12532
Catalytic activity : Enzyme2.7.3.2 [ Enzyme-Expasy ]   2.7.3.22.7.3.2 [ IntEnz-EBI ]   2.7.3.2 [ BRENDA ]   2.7.3.2 [ KEGG ]   
PhosPhoSitePlusP12532
Domaine pattern : Prosite (Expaxy)PHOSPHAGEN_KINASE (PS00112)    PHOSPHAGEN_KINASE_C (PS51510)    PHOSPHAGEN_KINASE_N (PS51509)   
Domains : Interpro (EBI)ATP-guanido_PTrfase    ATP-guanido_PTrfase_AS    ATP-guanido_PTrfase_cat    ATP-guanido_PTrfase_N    Gln_synth/guanido_kin_cat_dom   
Domain families : Pfam (Sanger)ATP-gua_Ptrans (PF00217)    ATP-gua_PtransN (PF02807)   
Domain families : Pfam (NCBI)pfam00217    pfam02807   
Conserved Domain (NCBI)CKMT1B
DMDM Disease mutations1159
Blocks (Seattle)CKMT1B
PDB (SRS)1QK1   
PDB (PDBSum)1QK1   
PDB (IMB)1QK1   
PDB (RSDB)1QK1   
Structural Biology KnowledgeBase1QK1   
SCOP (Structural Classification of Proteins)1QK1   
CATH (Classification of proteins structures)1QK1   
SuperfamilyP12532
Human Protein AtlasENSG00000237289
Peptide AtlasP12532
HPRD00424
IPIIPI00658109   IPI00877726   IPI00921866   IPI01012928   IPI00878893   IPI00797318   IPI01011569   IPI00852728   IPI00853566   IPI00878580   IPI00922077   IPI00790174   IPI01009935   IPI00916133   
Protein Interaction databases
DIP (DOE-UCLA)P12532
IntAct (EBI)P12532
FunCoupENSG00000237289
BioGRIDCKMT1B
STRING (EMBL)CKMT1B
ZODIACCKMT1B
Ontologies - Pathways
QuickGOP12532
Ontology : AmiGOcreatine kinase activity  ATP binding  mitochondrion  mitochondrial inner membrane  creatine metabolic process  phosphorylation  extracellular exosome  
Ontology : EGO-EBIcreatine kinase activity  ATP binding  mitochondrion  mitochondrial inner membrane  creatine metabolic process  phosphorylation  extracellular exosome  
Pathways : KEGGArginine and proline metabolism   
NDEx NetworkCKMT1B
Atlas of Cancer Signalling NetworkCKMT1B
Wikipedia pathwaysCKMT1B
Orthology - Evolution
OrthoDB1159
GeneTree (enSembl)ENSG00000237289
Phylogenetic Trees/Animal Genes : TreeFamCKMT1B
HOVERGENP12532
HOGENOMP12532
Homologs : HomoloGeneCKMT1B
Homology/Alignments : Family Browser (UCSC)CKMT1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCKMT1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CKMT1B
dbVarCKMT1B
ClinVarCKMT1B
1000_GenomesCKMT1B 
Exome Variant ServerCKMT1B
ExAC (Exome Aggregation Consortium)CKMT1B (select the gene name)
Genetic variants : HAPMAP1159
Genomic Variants (DGV)CKMT1B [DGVbeta]
DECIPHERCKMT1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCKMT1B 
Mutations
ICGC Data PortalCKMT1B 
TCGA Data PortalCKMT1B 
Broad Tumor PortalCKMT1B
OASIS PortalCKMT1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCKMT1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCKMT1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CKMT1B
DgiDB (Drug Gene Interaction Database)CKMT1B
DoCM (Curated mutations)CKMT1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CKMT1B (select a term)
intoGenCKMT1B
Cancer3DCKMT1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123290   
Orphanet
MedgenCKMT1B
Genetic Testing Registry CKMT1B
NextProtP12532 [Medical]
TSGene1159
GENETestsCKMT1B
Target ValidationCKMT1B
Huge Navigator CKMT1B [HugePedia]
snp3D : Map Gene to Disease1159
BioCentury BCIQCKMT1B
ClinGenCKMT1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1159
Chemical/Pharm GKB GenePA26533
Clinical trialCKMT1B
Miscellaneous
canSAR (ICR)CKMT1B (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKMT1B
EVEXCKMT1B
GoPubMedCKMT1B
iHOPCKMT1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:57:59 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.