Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CKMT2-AS1 (CKMT2 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) CKMT2-AS1
LocusID (NCBI) 100131067
Atlas_Id 61845
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 80533384 and ends at 80597388 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CKMT2-AS1   48997
Cards
Entrez_Gene (NCBI)CKMT2-AS1  100131067  CKMT2 antisense RNA 1
Aliases
GeneCards (Weizmann)CKMT2-AS1
Ensembl hg19 (Hinxton)ENSG00000247572 [Gene_View]  chr5:80533384-80597388 [Contig_View]  CKMT2-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000247572 [Gene_View]  chr5:80533384-80597388 [Contig_View]  CKMT2-AS1 [Vega]
ICGC DataPortalENSG00000247572
TCGA cBioPortalCKMT2-AS1
AceView (NCBI)CKMT2-AS1
Genatlas (Paris)CKMT2-AS1
WikiGenes100131067
SOURCE (Princeton)CKMT2-AS1
Genetics Home Reference (NIH)CKMT2-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)CKMT2-AS1  -     chr5:80533384-80597388 -  5q14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CKMT2-AS1  -     5q14.1   [Description]    (hg38-Dec_2013)
EnsemblCKMT2-AS1 - 5q14.1 [CytoView hg19]  CKMT2-AS1 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBICKMT2-AS1 [Mapview hg19]  CKMT2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092460 AK096014 AK096680 DB051602 HG498131
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)CKMT2-AS1
Cluster EST : UnigeneHs.655855 [ NCBI ]
CGAP (NCI)Hs.655855
Alternative Splicing GalleryENSG00000247572
Gene ExpressionCKMT2-AS1 [ NCBI-GEO ]   CKMT2-AS1 [ EBI - ARRAY_EXPRESS ]   CKMT2-AS1 [ SEEK ]   CKMT2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CKMT2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100131067
GTEX Portal (Tissue expression)CKMT2-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CKMT2-AS1
DMDM Disease mutations100131067
Blocks (Seattle)CKMT2-AS1
Human Protein AtlasENSG00000247572
Protein Interaction databases
FunCoupENSG00000247572
BioGRIDCKMT2-AS1
STRING (EMBL)CKMT2-AS1
ZODIACCKMT2-AS1
Ontologies - Pathways
Huge Navigator CKMT2-AS1 [HugePedia]
snp3D : Map Gene to Disease100131067
BioCentury BCIQCKMT2-AS1
ClinGenCKMT2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131067
Clinical trialCKMT2-AS1
Miscellaneous
canSAR (ICR)CKMT2-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCKMT2-AS1
EVEXCKMT2-AS1
GoPubMedCKMT2-AS1
iHOPCKMT2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:33 CET 2017

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