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CLASRP (CLK4 associating serine/arginine rich protein)

Identity

Alias_namesSFRS16
splicing factor, arginine/serine-rich 16
CLK4-associating serine/arginine rich protein
Alias_symbol (synonym)SWAP2
CLASP
Other alias
HGNC (Hugo) CLASRP
LocusID (NCBI) 11129
Atlas_Id 61848
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45039040 and ends at 45070956 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLASRP (19q13.32) / CLASRP (19q13.32)CLASRP (19q13.32) / CLPTM1 (19q13.32)CLASRP (19q13.32) / ENO2 (12p13.31)
CLASRP (19q13.32) / RELB (19q13.32)DNAJC5 (20q13.33) / CLASRP (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLASRP   17731
Cards
Entrez_Gene (NCBI)CLASRP  11129  CLK4 associating serine/arginine rich protein
AliasesCLASP; SFRS16; SWAP2
GeneCards (Weizmann)CLASRP
Ensembl hg19 (Hinxton)ENSG00000104859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104859 [Gene_View]  chr19:45039040-45070956 [Contig_View]  CLASRP [Vega]
ICGC DataPortalENSG00000104859
TCGA cBioPortalCLASRP
AceView (NCBI)CLASRP
Genatlas (Paris)CLASRP
WikiGenes11129
SOURCE (Princeton)CLASRP
Genetics Home Reference (NIH)CLASRP
Genomic and cartography
GoldenPath hg38 (UCSC)CLASRP  -     chr19:45039040-45070956 +  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLASRP  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblCLASRP - 19q13.32 [CytoView hg19]  CLASRP - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBICLASRP [Mapview hg19]  CLASRP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF042800 AK074590 AK094681 AK293333 AL080189
RefSeq transcript (Entrez)NM_001278439 NM_007056
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLASRP
Cluster EST : UnigeneHs.466917 [ NCBI ]
CGAP (NCI)Hs.466917
Alternative Splicing GalleryENSG00000104859
Gene ExpressionCLASRP [ NCBI-GEO ]   CLASRP [ EBI - ARRAY_EXPRESS ]   CLASRP [ SEEK ]   CLASRP [ MEM ]
Gene Expression Viewer (FireBrowse)CLASRP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11129
GTEX Portal (Tissue expression)CLASRP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2M8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2M8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2M8
Splice isoforms : SwissVarQ8N2M8
PhosPhoSitePlusQ8N2M8
Domains : Interpro (EBI)SWAP_N_domain   
Domain families : Pfam (Sanger)DRY_EERY (PF09750)   
Domain families : Pfam (NCBI)pfam09750   
Domain families : Smart (EMBL)DRY_EERY (SM01141)  
Conserved Domain (NCBI)CLASRP
DMDM Disease mutations11129
Blocks (Seattle)CLASRP
SuperfamilyQ8N2M8
Human Protein AtlasENSG00000104859
Peptide AtlasQ8N2M8
HPRD11552
IPIIPI00013107   IPI00432061   IPI00910790   IPI01014985   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2M8
IntAct (EBI)Q8N2M8
FunCoupENSG00000104859
BioGRIDCLASRP
STRING (EMBL)CLASRP
ZODIACCLASRP
Ontologies - Pathways
QuickGOQ8N2M8
Ontology : AmiGOnucleus  mRNA processing  RNA splicing  
Ontology : EGO-EBInucleus  mRNA processing  RNA splicing  
NDEx NetworkCLASRP
Atlas of Cancer Signalling NetworkCLASRP
Wikipedia pathwaysCLASRP
Orthology - Evolution
OrthoDB11129
GeneTree (enSembl)ENSG00000104859
Phylogenetic Trees/Animal Genes : TreeFamCLASRP
HOVERGENQ8N2M8
HOGENOMQ8N2M8
Homologs : HomoloGeneCLASRP
Homology/Alignments : Family Browser (UCSC)CLASRP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLASRP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLASRP
dbVarCLASRP
ClinVarCLASRP
1000_GenomesCLASRP 
Exome Variant ServerCLASRP
ExAC (Exome Aggregation Consortium)CLASRP (select the gene name)
Genetic variants : HAPMAP11129
Genomic Variants (DGV)CLASRP [DGVbeta]
DECIPHERCLASRP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLASRP 
Mutations
ICGC Data PortalCLASRP 
TCGA Data PortalCLASRP 
Broad Tumor PortalCLASRP
OASIS PortalCLASRP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLASRP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLASRP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLASRP
DgiDB (Drug Gene Interaction Database)CLASRP
DoCM (Curated mutations)CLASRP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLASRP (select a term)
intoGenCLASRP
Cancer3DCLASRP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCLASRP
Genetic Testing Registry CLASRP
NextProtQ8N2M8 [Medical]
TSGene11129
GENETestsCLASRP
Target ValidationCLASRP
Huge Navigator CLASRP [HugePedia]
snp3D : Map Gene to Disease11129
BioCentury BCIQCLASRP
ClinGenCLASRP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11129
Chemical/Pharm GKB GenePA134961731
Clinical trialCLASRP
Miscellaneous
canSAR (ICR)CLASRP (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLASRP
EVEXCLASRP
GoPubMedCLASRP
iHOPCLASRP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:52 CEST 2017

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