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CLBA1 (clathrin binding box of aftiphilin containing 1)

Identity

Alias_namesC14orf79
chromosome 14 open reading frame 79
Other alias
HGNC (Hugo) CLBA1
LocusID (NCBI) 122616
Atlas_Id 78897
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 104986279 and ends at 104995518 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CLBA1   20126
Cards
Entrez_Gene (NCBI)CLBA1  122616  clathrin binding box of aftiphilin containing 1
AliasesC14orf79
GeneCards (Weizmann)CLBA1
Ensembl hg19 (Hinxton)ENSG00000140104 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140104 [Gene_View]  chr14:104986279-104995518 [Contig_View]  CLBA1 [Vega]
ICGC DataPortalENSG00000140104
TCGA cBioPortalCLBA1
AceView (NCBI)CLBA1
Genatlas (Paris)CLBA1
WikiGenes122616
SOURCE (Princeton)CLBA1
Genetics Home Reference (NIH)CLBA1
Genomic and cartography
GoldenPath hg38 (UCSC)CLBA1  -     chr14:104986279-104995518 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CLBA1  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblCLBA1 - 14q32.33 [CytoView hg19]  CLBA1 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBICLBA1 [Mapview hg19]  CLBA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF038188 AK057249 BC003539 BC011537 BC025175
RefSeq transcript (Entrez)NM_174891
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CLBA1
Cluster EST : UnigeneHs.27183 [ NCBI ]
CGAP (NCI)Hs.27183
Alternative Splicing GalleryENSG00000140104
Gene ExpressionCLBA1 [ NCBI-GEO ]   CLBA1 [ EBI - ARRAY_EXPRESS ]   CLBA1 [ SEEK ]   CLBA1 [ MEM ]
Gene Expression Viewer (FireBrowse)CLBA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122616
GTEX Portal (Tissue expression)CLBA1
Human Protein AtlasENSG00000140104-CLBA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96F83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96F83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96F83
Splice isoforms : SwissVarQ96F83
PhosPhoSitePlusQ96F83
Domains : Interpro (EBI)Clathrin-bd   
Domain families : Pfam (Sanger)Clathrin_bdg (PF15045)   
Domain families : Pfam (NCBI)pfam15045   
Conserved Domain (NCBI)CLBA1
DMDM Disease mutations122616
Blocks (Seattle)CLBA1
SuperfamilyQ96F83
Human Protein Atlas [tissue]ENSG00000140104-CLBA1 [tissue]
Peptide AtlasQ96F83
IPIIPI00055680   IPI01022299   IPI01022125   IPI01021310   IPI01022450   
Protein Interaction databases
DIP (DOE-UCLA)Q96F83
IntAct (EBI)Q96F83
FunCoupENSG00000140104
BioGRIDCLBA1
STRING (EMBL)CLBA1
ZODIACCLBA1
Ontologies - Pathways
QuickGOQ96F83
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCLBA1
Atlas of Cancer Signalling NetworkCLBA1
Wikipedia pathwaysCLBA1
Orthology - Evolution
OrthoDB122616
GeneTree (enSembl)ENSG00000140104
Phylogenetic Trees/Animal Genes : TreeFamCLBA1
HOVERGENQ96F83
HOGENOMQ96F83
Homologs : HomoloGeneCLBA1
Homology/Alignments : Family Browser (UCSC)CLBA1
Gene fusions - Rearrangements
Tumor Fusion PortalCLBA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLBA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLBA1
dbVarCLBA1
ClinVarCLBA1
1000_GenomesCLBA1 
Exome Variant ServerCLBA1
ExAC (Exome Aggregation Consortium)ENSG00000140104
GNOMAD BrowserENSG00000140104
Genetic variants : HAPMAP122616
Genomic Variants (DGV)CLBA1 [DGVbeta]
DECIPHERCLBA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCLBA1 
Mutations
ICGC Data PortalCLBA1 
TCGA Data PortalCLBA1 
Broad Tumor PortalCLBA1
OASIS PortalCLBA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCLBA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLBA1
DgiDB (Drug Gene Interaction Database)CLBA1
DoCM (Curated mutations)CLBA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLBA1 (select a term)
intoGenCLBA1
Cancer3DCLBA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCLBA1
MedgenCLBA1
Genetic Testing Registry CLBA1
NextProtQ96F83 [Medical]
TSGene122616
GENETestsCLBA1
Target ValidationCLBA1
Huge Navigator CLBA1 [HugePedia]
snp3D : Map Gene to Disease122616
BioCentury BCIQCLBA1
ClinGenCLBA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122616
Chemical/Pharm GKB GenePA134876308
Clinical trialCLBA1
Miscellaneous
canSAR (ICR)CLBA1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLBA1
EVEXCLBA1
GoPubMedCLBA1
iHOPCLBA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:29:20 CET 2017

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