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CLCA3P (chloride channel accessory 3, pseudogene)

Identity

Alias_namesCLCA3
chloride channel, calcium activated, family member 3
chloride channel regulator 3
Other alias
HGNC (Hugo) CLCA3P
LocusID (NCBI) 9629
Atlas_Id 61849
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 87099959 and ends at 87121059 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CLCA3P   2017
Cards
Entrez_Gene (NCBI)CLCA3P  9629  chloride channel accessory 3, pseudogene
AliasesCLCA3
GeneCards (Weizmann)CLCA3P
Ensembl hg19 (Hinxton)ENSG00000153923 [Gene_View]  chr1:87099959-87121059 [Contig_View]  CLCA3P [Vega]
Ensembl hg38 (Hinxton)ENSG00000153923 [Gene_View]  chr1:87099959-87121059 [Contig_View]  CLCA3P [Vega]
ICGC DataPortalENSG00000153923
TCGA cBioPortalCLCA3P
AceView (NCBI)CLCA3P
Genatlas (Paris)CLCA3P
WikiGenes9629
SOURCE (Princeton)CLCA3P
Genetics Home Reference (NIH)CLCA3P
Genomic and cartography
GoldenPath hg19 (UCSC)CLCA3P  -     chr1:87099959-87121059 +  1p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CLCA3P  -     1p22.3   [Description]    (hg38-Dec_2013)
EnsemblCLCA3P - 1p22.3 [CytoView hg19]  CLCA3P - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBICLCA3P [Mapview hg19]  CLCA3P [Mapview hg38]
OMIM604337   
Gene and transcription
Genbank (Entrez)AF043976
RefSeq transcript (Entrez)NM_004921
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)CLCA3P
Cluster EST : UnigeneHs.673847 [ NCBI ]
CGAP (NCI)Hs.673847
Alternative Splicing GalleryENSG00000153923
Gene ExpressionCLCA3P [ NCBI-GEO ]   CLCA3P [ EBI - ARRAY_EXPRESS ]   CLCA3P [ SEEK ]   CLCA3P [ MEM ]
Gene Expression Viewer (FireBrowse)CLCA3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9629
GTEX Portal (Tissue expression)CLCA3P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6N3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6N3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6N3
Splice isoforms : SwissVarQ9Y6N3
PhosPhoSitePlusQ9Y6N3
Domains : Interpro (EBI)Cl_channel_Ca   
Domain families : Pfam (Sanger)CLCA_N (PF08434)   
Domain families : Pfam (NCBI)pfam08434   
Conserved Domain (NCBI)CLCA3P
DMDM Disease mutations9629
Blocks (Seattle)CLCA3P
SuperfamilyQ9Y6N3
Human Protein AtlasENSG00000153923
Peptide AtlasQ9Y6N3
HPRD05065
IPIIPI00007392   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6N3
IntAct (EBI)Q9Y6N3
FunCoupENSG00000153923
BioGRIDCLCA3P
STRING (EMBL)CLCA3P
ZODIACCLCA3P
Ontologies - Pathways
QuickGOQ9Y6N3
Ontology : AmiGOtransporter activity  voltage-gated ion channel activity  chloride channel activity  calcium channel activity  extracellular region  extracellular space  plasma membrane  transport  ion transmembrane transport  chloride channel complex  regulation of ion transmembrane transport  transmembrane transport  calcium ion transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBItransporter activity  voltage-gated ion channel activity  chloride channel activity  calcium channel activity  extracellular region  extracellular space  plasma membrane  transport  ion transmembrane transport  chloride channel complex  regulation of ion transmembrane transport  transmembrane transport  calcium ion transmembrane transport  chloride transmembrane transport  
NDEx NetworkCLCA3P
Atlas of Cancer Signalling NetworkCLCA3P
Wikipedia pathwaysCLCA3P
Orthology - Evolution
OrthoDB9629
GeneTree (enSembl)ENSG00000153923
Phylogenetic Trees/Animal Genes : TreeFamCLCA3P
HOVERGENQ9Y6N3
HOGENOMQ9Y6N3
Homologs : HomoloGeneCLCA3P
Homology/Alignments : Family Browser (UCSC)CLCA3P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCLCA3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CLCA3P
dbVarCLCA3P
ClinVarCLCA3P
1000_GenomesCLCA3P 
Exome Variant ServerCLCA3P
ExAC (Exome Aggregation Consortium)CLCA3P (select the gene name)
Genetic variants : HAPMAP9629
Genomic Variants (DGV)CLCA3P [DGVbeta]
DECIPHER (Syndromes)1:87099959-87121059  ENSG00000153923
CONAN: Copy Number AnalysisCLCA3P 
Mutations
ICGC Data PortalCLCA3P 
TCGA Data PortalCLCA3P 
Broad Tumor PortalCLCA3P
OASIS PortalCLCA3P [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCLCA3P  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCLCA3P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CLCA3P
DgiDB (Drug Gene Interaction Database)CLCA3P
DoCM (Curated mutations)CLCA3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CLCA3P (select a term)
intoGenCLCA3P
Cancer3DCLCA3P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604337   
Orphanet
MedgenCLCA3P
Genetic Testing Registry CLCA3P
NextProtQ9Y6N3 [Medical]
TSGene9629
GENETestsCLCA3P
Huge Navigator CLCA3P [HugePedia]
snp3D : Map Gene to Disease9629
BioCentury BCIQCLCA3P
ClinGenCLCA3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9629
Chemical/Pharm GKB GenePA26544
Clinical trialCLCA3P
Miscellaneous
canSAR (ICR)CLCA3P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCLCA3P
EVEXCLCA3P
GoPubMedCLCA3P
iHOPCLCA3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:59:33 CET 2017

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